diff gff3_splitgff.xml @ 3:8bd03ba8510a draft

planemo upload commit edc74553919d09dcbe27fcadf144612c1ad3a2a2

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gff3_splitgff.xml	Fri Apr 28 01:35:25 2023 +0000
@@ -0,0 +1,35 @@
+<tool id="edu.tamu.cpt2.gff3.splitGff" name="Split GFF3+Fasta into separate parts" version="22.0.0">
+  <description/>
+  <macros>
+    <import>macros.xml</import>
+    <import>cpt-macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+'python $__tool_directory__/gff3_splitgff.py'
+'$input'
+
+--gff '$gff_out'
+--fasta '$fasta_out'
+]]></command>
+  <inputs>
+    <param label="Combined GFF3/Fasta File" name="input" type="data" format="gff,gff3"/>
+  </inputs>
+  <outputs>
+    <data format="gff3" label="GFF Portion of ${input.name}" name="gff_out"/>
+    <data format="fasta" label="Fasta Portion of ${input.name}" name="fasta_out"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="Miro_SplitIn.gff3"/>
+      <output name="gff" file="Miro_SplitOut.gff3"/>
+      <output name="fasta" file="Miro_SplitOut.fa"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+**What it does**
+
+Splits apart the GFF3/Fasta data in a combined file into separate fasta and gff3 files.
+      ]]></help>
+  <expand macro="citations"/>
+</tool>