Mercurial > repos > cpt > cpt_intersect_adj

annotate test-data/T7_IntersectAOut.gff3 @ 5:00aab5199327 draft default tip

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planemo upload commit 6b68423e1d9bbced95ecfb92e26329a7e8d7df47
author cpt
date Mon, 12 Aug 2024 04:40:20 +0000
parents 923d2528480d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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1 ##gff-version 3
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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2 ##sequence-region NC_001604 1 39937
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3 NC_001604 feature Chain 545 634 . - . Description=Transmembrane protein;ID=tmhmm_tmd_1-f21272ae-496f-4fc1-8d6e-c0ea75f90171;Note=Transmembrane protein - N in C out;Target=ORF.0.2506_0.167028375883.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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4 NC_001604 TMHMM Topological domain 620 637 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_1-f21272ae-496f-4fc1-8d6e-c0ea75f90171;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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5 NC_001604 TMHMM Transmembrane 551 619 . - . Note=Helical;Parent=tmhmm_tmd_1-f21272ae-496f-4fc1-8d6e-c0ea75f90171;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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6 NC_001604 TMHMM Topological domain 545 550 . - . Note=Extracellular;Parent=tmhmm_tmd_1-f21272ae-496f-4fc1-8d6e-c0ea75f90171;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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7 NC_001604 feature Chain 1499 1636 . + . Description=Transmembrane protein;ID=tmhmm_tmd_2-82f21b97-6a7e-4ddd-9c7a-a6043f5b598e;Note=Transmembrane protein - N out C in;Target=ORF.0.566_0.38534199341.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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8 NC_001604 TMHMM Topological domain 1496 1561 . + . Note=Extracellular;Parent=tmhmm_tmd_2-82f21b97-6a7e-4ddd-9c7a-a6043f5b598e;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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9 NC_001604 TMHMM Transmembrane 1562 1630 . + . Note=Helical;Parent=tmhmm_tmd_2-82f21b97-6a7e-4ddd-9c7a-a6043f5b598e;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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10 NC_001604 TMHMM Topological domain 1631 1636 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_2-82f21b97-6a7e-4ddd-9c7a-a6043f5b598e;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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11 NC_001604 feature Chain 1505 1636 . + . Description=Transmembrane protein;ID=tmhmm_tmd_3-86aae52d-c800-485f-8895-a9287e122d65;Note=Transmembrane protein - N out C in;Target=ORF.0.567_0.804461971525.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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12 NC_001604 TMHMM Topological domain 1502 1543 . + . Note=Extracellular;Parent=tmhmm_tmd_3-86aae52d-c800-485f-8895-a9287e122d65;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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13 NC_001604 TMHMM Transmembrane 1544 1612 . + . Note=Helical;Parent=tmhmm_tmd_3-86aae52d-c800-485f-8895-a9287e122d65;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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14 NC_001604 TMHMM Topological domain 1613 1636 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_3-86aae52d-c800-485f-8895-a9287e122d65;
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15 NC_001604 feature Chain 1782 2018 . - . Description=Transmembrane protein;ID=tmhmm_tmd_4-69abcd70-170f-472f-8d52-eeb29376d71b;Note=Transmembrane protein - N in C out;Target=ORF.0.3347_0.667378729511.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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16 NC_001604 TMHMM Topological domain 1986 2021 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_4-69abcd70-170f-472f-8d52-eeb29376d71b;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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17 NC_001604 TMHMM Transmembrane 1917 1985 . - . Note=Helical;Parent=tmhmm_tmd_4-69abcd70-170f-472f-8d52-eeb29376d71b;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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18 NC_001604 TMHMM Topological domain 1782 1916 . - . Note=Extracellular;Parent=tmhmm_tmd_4-69abcd70-170f-472f-8d52-eeb29376d71b;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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19 NC_001604 feature Chain 7611 7760 . + . Description=Transmembrane protein;ID=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;Note=Transmembrane protein - N in C in;Target=ORF.0.1571_0.432752129598.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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20 NC_001604 TMHMM Topological domain 7608 7619 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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21 NC_001604 TMHMM Transmembrane 7620 7679 . + . Note=Helical;Parent=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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22 NC_001604 TMHMM Topological domain 7680 7688 . + . Note=Extracellular;Parent=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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23 NC_001604 TMHMM Transmembrane 7689 7757 . + . Note=Helical;Parent=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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24 NC_001604 TMHMM Topological domain 7758 7760 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_15-06ae012d-7e0c-43f2-b065-b3d75bad06ce;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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25 NC_001604 feature Chain 8241 8393 . - . Description=Transmembrane protein;ID=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;Note=Transmembrane protein - N in C in;Target=ORF.0.3260_0.786396696237.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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26 NC_001604 TMHMM Topological domain 8385 8396 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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27 NC_001604 TMHMM Transmembrane 8325 8384 . - . Note=Helical;Parent=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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28 NC_001604 TMHMM Topological domain 8313 8324 . - . Note=Extracellular;Parent=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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29 NC_001604 TMHMM Transmembrane 8244 8312 . - . Note=Helical;Parent=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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30 NC_001604 TMHMM Topological domain 8241 8243 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_17-acc5c4e6-6a78-4138-b96b-e14da7269fa4;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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31 NC_001604 feature Chain 8241 8417 . - . Description=Transmembrane protein;ID=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;Note=Transmembrane protein - N in C in;Target=ORF.0.3257_0.390605676456.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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32 NC_001604 TMHMM Topological domain 8385 8420 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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33 NC_001604 TMHMM Transmembrane 8325 8384 . - . Note=Helical;Parent=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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34 NC_001604 TMHMM Topological domain 8313 8324 . - . Note=Extracellular;Parent=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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35 NC_001604 TMHMM Transmembrane 8244 8312 . - . Note=Helical;Parent=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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36 NC_001604 TMHMM Topological domain 8241 8243 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_16-c54ddff2-51cc-44c9-9b51-740c9e634c09;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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37 NC_001604 feature Chain 12298 12417 . + . Description=Transmembrane protein;ID=tmhmm_tmd_22-62203e00-6f4f-44f9-9dfc-e782e68af436;Note=Transmembrane protein - N in C out;Target=ORF.0.146_0.862093981501.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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38 NC_001604 TMHMM Topological domain 12295 12312 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_22-62203e00-6f4f-44f9-9dfc-e782e68af436;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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39 NC_001604 TMHMM Transmembrane 12313 12372 . + . Note=Helical;Parent=tmhmm_tmd_22-62203e00-6f4f-44f9-9dfc-e782e68af436;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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40 NC_001604 TMHMM Topological domain 12373 12417 . + . Note=Extracellular;Parent=tmhmm_tmd_22-62203e00-6f4f-44f9-9dfc-e782e68af436;
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41 NC_001604 feature Chain 12310 12417 . + . Description=Transmembrane protein;ID=tmhmm_tmd_23-d9df3929-0107-4bf7-98fb-af72469396d3;Note=Transmembrane protein - N in C out;Target=ORF.0.147_0.801965827017.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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42 NC_001604 TMHMM Topological domain 12307 12324 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_23-d9df3929-0107-4bf7-98fb-af72469396d3;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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43 NC_001604 TMHMM Transmembrane 12325 12378 . + . Note=Helical;Parent=tmhmm_tmd_23-d9df3929-0107-4bf7-98fb-af72469396d3;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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44 NC_001604 TMHMM Topological domain 12379 12417 . + . Note=Extracellular;Parent=tmhmm_tmd_23-d9df3929-0107-4bf7-98fb-af72469396d3;
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45 NC_001604 feature Chain 12991 13323 . + . Description=Transmembrane protein;ID=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;Note=Transmembrane protein - N in C in;Target=ORF.0.156_0.0712415448217.CDS;
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46 NC_001604 TMHMM Topological domain 12988 13005 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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47 NC_001604 TMHMM Transmembrane 13006 13074 . + . Note=Helical;Parent=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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48 NC_001604 TMHMM Topological domain 13075 13086 . + . Note=Extracellular;Parent=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;
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49 NC_001604 TMHMM Transmembrane 13087 13155 . + . Note=Helical;Parent=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;
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50 NC_001604 TMHMM Topological domain 13156 13323 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_24-976d0b1e-57ab-4a73-8331-9bbd863feaa5;
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51 NC_001604 feature Chain 15202 15342 . - . Description=Transmembrane protein;ID=tmhmm_tmd_26-93e5780e-9be1-40a4-bd26-7389d5e7eb9b;Note=Transmembrane protein - N out C in;Target=ORF.0.2828_0.260962590428.CDS;
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52 NC_001604 TMHMM Topological domain 15319 15345 . - . Note=Extracellular;Parent=tmhmm_tmd_26-93e5780e-9be1-40a4-bd26-7389d5e7eb9b;
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53 NC_001604 TMHMM Transmembrane 15250 15318 . - . Note=Helical;Parent=tmhmm_tmd_26-93e5780e-9be1-40a4-bd26-7389d5e7eb9b;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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54 NC_001604 TMHMM Topological domain 15202 15249 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_26-93e5780e-9be1-40a4-bd26-7389d5e7eb9b;
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55 NC_001604 feature Chain 15202 15372 . - . Description=Transmembrane protein;ID=tmhmm_tmd_25-fea2e54b-e2fa-47d6-8a46-35e7ba119b92;Note=Transmembrane protein - N in C out;Target=ORF.0.2827_0.307040161403.CDS;
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56 NC_001604 TMHMM Topological domain 15316 15375 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_25-fea2e54b-e2fa-47d6-8a46-35e7ba119b92;
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57 NC_001604 TMHMM Transmembrane 15247 15315 . - . Note=Helical;Parent=tmhmm_tmd_25-fea2e54b-e2fa-47d6-8a46-35e7ba119b92;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
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58 NC_001604 TMHMM Topological domain 15202 15246 . - . Note=Extracellular;Parent=tmhmm_tmd_25-fea2e54b-e2fa-47d6-8a46-35e7ba119b92;
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59 NC_001604 feature Chain 18397 18504 . + . Description=Transmembrane protein;ID=tmhmm_tmd_33-5de09f17-eff3-46d8-abe6-96ae4dfd69fc;Note=Transmembrane protein - N out C in;Target=ORF.0.298_0.896134049513.CDS;
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60 NC_001604 TMHMM Topological domain 18394 18405 . + . Note=Extracellular;Parent=tmhmm_tmd_33-5de09f17-eff3-46d8-abe6-96ae4dfd69fc;
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61 NC_001604 TMHMM Transmembrane 18406 18465 . + . Note=Helical;Parent=tmhmm_tmd_33-5de09f17-eff3-46d8-abe6-96ae4dfd69fc;
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62 NC_001604 TMHMM Topological domain 18466 18504 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_33-5de09f17-eff3-46d8-abe6-96ae4dfd69fc;
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63 NC_001604 feature Chain 19351 19761 . - . Description=Transmembrane protein;ID=tmhmm_tmd_35-6ad75bad-a355-49a8-ae3b-b61762d6bde7;Note=Transmembrane protein - N out C in;Target=ORF.0.2751_0.199850521186.CDS;
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64 NC_001604 TMHMM Topological domain 19588 19764 . - . Note=Extracellular;Parent=tmhmm_tmd_35-6ad75bad-a355-49a8-ae3b-b61762d6bde7;
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65 NC_001604 TMHMM Transmembrane 19519 19587 . - . Note=Helical;Parent=tmhmm_tmd_35-6ad75bad-a355-49a8-ae3b-b61762d6bde7;
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66 NC_001604 TMHMM Topological domain 19351 19518 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_35-6ad75bad-a355-49a8-ae3b-b61762d6bde7;
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67 NC_001604 feature Chain 28523 29278 . - . Description=Transmembrane protein;ID=tmhmm_tmd_36-7ccd4500-53cb-4119-b088-ef9b6866ee18;Note=Transmembrane protein - N in C out;Target=ORF.0.2112_0.388955799353.CDS;
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68 NC_001604 TMHMM Topological domain 28784 29281 . - . Note=Cytoplasmic;Parent=tmhmm_tmd_36-7ccd4500-53cb-4119-b088-ef9b6866ee18;
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69 NC_001604 TMHMM Transmembrane 28715 28783 . - . Note=Helical;Parent=tmhmm_tmd_36-7ccd4500-53cb-4119-b088-ef9b6866ee18;
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70 NC_001604 TMHMM Topological domain 28523 28714 . - . Note=Extracellular;Parent=tmhmm_tmd_36-7ccd4500-53cb-4119-b088-ef9b6866ee18;
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71 NC_001604 feature Chain 37035 37280 . + . Description=Transmembrane protein;ID=tmhmm_tmd_44-b4121b3a-f384-4f27-8abb-e14261bfd2fd;Note=Transmembrane protein - N in C out;Target=ORF.0.1961_0.261039005028.CDS;
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72 NC_001604 TMHMM Topological domain 37032 37112 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_44-b4121b3a-f384-4f27-8abb-e14261bfd2fd;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
73 NC_001604 TMHMM Transmembrane 37113 37181 . + . Note=Helical;Parent=tmhmm_tmd_44-b4121b3a-f384-4f27-8abb-e14261bfd2fd;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
74 NC_001604 TMHMM Topological domain 37182 37280 . + . Note=Extracellular;Parent=tmhmm_tmd_44-b4121b3a-f384-4f27-8abb-e14261bfd2fd;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
75 NC_001604 feature Chain 39392 39535 . + . Description=Transmembrane protein;ID=tmhmm_tmd_45-ec6c20e1-8a25-47bf-8ded-cbe854809ce3;Note=Transmembrane protein - N in C out;Target=ORF.0.1414_0.296990322019.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
76 NC_001604 TMHMM Topological domain 39389 39424 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_45-ec6c20e1-8a25-47bf-8ded-cbe854809ce3;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
77 NC_001604 TMHMM Transmembrane 39425 39478 . + . Note=Helical;Parent=tmhmm_tmd_45-ec6c20e1-8a25-47bf-8ded-cbe854809ce3;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
78 NC_001604 TMHMM Topological domain 39479 39535 . + . Note=Extracellular;Parent=tmhmm_tmd_45-ec6c20e1-8a25-47bf-8ded-cbe854809ce3;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
79 NC_001604 feature Chain 39456 39554 . + . Description=Transmembrane protein;ID=tmhmm_tmd_46-bb7be945-aca9-4ef4-93f5-4de3337ea164;Note=Transmembrane protein - N out C in;Target=ORF.0.2021_0.203671539857.CDS;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
80 NC_001604 TMHMM Topological domain 39453 39494 . + . Note=Extracellular;Parent=tmhmm_tmd_46-bb7be945-aca9-4ef4-93f5-4de3337ea164;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
81 NC_001604 TMHMM Transmembrane 39495 39548 . + . Note=Helical;Parent=tmhmm_tmd_46-bb7be945-aca9-4ef4-93f5-4de3337ea164;
923d2528480d planemo upload commit 8500f316f8325380aa5d0000fbd13dd96012b1bb
cpt
parents:
diff changeset
82 NC_001604 TMHMM Topological domain 39549 39554 . + . Note=Cytoplasmic;Parent=tmhmm_tmd_46-bb7be945-aca9-4ef4-93f5-4de3337ea164;