Mercurial > repos > cpt > cpt_intersect_adj

diff intersect_and_adjacent.xml @ 1:f7d19040fafa draft

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planemo upload commit 79bba3858aa6c0b5cc271fe69c485830acd428e2
author cpt
date Sun, 11 Aug 2024 22:22:44 +0000
parents 923d2528480d
children 0dbc7fbad0ab
line wrap: on
line diff
--- a/intersect_and_adjacent.xml	Thu Aug 08 04:14:38 2024 +0000
+++ b/intersect_and_adjacent.xml	Sun Aug 11 22:22:44 2024 +0000
@@ -3,18 +3,20 @@
   <macros>
     <import>macros.xml</import>
   </macros>
+  <expand macro="requirements"/>
   <requirements>
     <requirement type="package" version="3.0.2">intervaltree</requirement>
   </requirements>
   <command detect_errors="aggressive"><![CDATA[
-python '$__tool_directory__/intersect_and_adjacent.py'
-'$gff3_data_a'
-'$gff3_data_b'
-'$window'
-'$stranding'
---oa '$oa'
---ob '$ob'
-]]></command>
+    python '$__tool_directory__/intersect_and_adjacent.py'
+    '$gff3_data_a'
+    '$gff3_data_b'
+    '$window'
+    '$stranding'
+    --oa '$oa'
+    --ob '$ob'
+    ]]>
+  </command>
   <inputs>
     <param label="GFF3 Annotations A" name="gff3_data_a" type="data" format="gff3"/>
     <param label="GFF3 Annotations B" name="gff3_data_b" type="data" format="gff3"/>