Mercurial > repos > cpt > cpt_phageqc_annotations
diff cpt_phageqc_annotation/macros.xml @ 0:c3140b08d703 draft default tip
Uploaded
| author | cpt |
|---|---|
| date | Fri, 17 Jun 2022 13:00:50 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_phageqc_annotation/macros.xml Fri Jun 17 13:00:50 2022 +0000 @@ -0,0 +1,23 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="3.8.13">python</requirement> + <requirement type="package" version="1.79">biopython</requirement> + <requirement type="package" version="1.2.2">cpt_gffparser</requirement> + <yield/> + </requirements> + </xml> + <xml name="genome_selector"> + <param name="genome_fasta" type="data" format="fasta" label="Source FASTA Sequence"/> + </xml> + <xml name="gff3_input"> + <param label="GFF3 Annotations" name="gff3_data" type="data" format="gff3"/> + </xml> + <token name="@GENOME_SELECTOR_PRE@"> + ln -s $genome_fasta genomeref.fa; + </token> + <token name="@GENOME_SELECTOR@"> + genomeref.fa + </token> +</macros>