Mercurial > repos > cpt > cpt_phageqc_annotations
diff cpt_phageqc_annotation/test-data/AY216660.gff3 @ 0:c3140b08d703 draft default tip
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| author | cpt |
|---|---|
| date | Fri, 17 Jun 2022 13:00:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_phageqc_annotation/test-data/AY216660.gff3 Fri Jun 17 13:00:50 2022 +0000 @@ -0,0 +1,315 @@ +##gff-version 3 +##sequence-region AY216660.2 1 48836 +AY216660.2 GbkToGff gene 40 576 . + . locus_tag=CPT-T1_001;ID=CPT-T1_001.gene; +AY216660.2 GbkToGff mRNA 40 576 . + . locus_tag=CPT-T1_001;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_001.mRNA;Parent=CPT-T1_001.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 40 43 . + . locus_tag=CPT-T1_001;regulatory_class=ribosome_binding_site;ID=CPT-T1_001.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_001.mRNA; +AY216660.2 GbkToGff CDS 52 576 . + 0 locus_tag=CPT-T1_001;codon_start=1;transl_table=11;product=terminase small subunit;translation=MSEPKNAPVVQGGNFKELYKKKFGTVLAKNRAMTPEQLFDLSVKYFEWAEDNAIKASESASFQGGVYESLVHKPRVFTWTGYRLFIGASEAAIIKWKREEEYSEVMEFVESVINEQKFQLAANGVINASFIGKDLGIDKPASINIENSSASASTVVATTEDAMKEAVNSILDML;note=Orf no. 54 see PMID: 14972552;ID=CPT-T1_001.CDS.1;Parent=CPT-T1_001.mRNA; +### +AY216660.2 GbkToGff gene 589 2184 . + . locus_tag=CPT-T1_002;ID=CPT-T1_002.gene; +AY216660.2 GbkToGff mRNA 589 2184 . + . locus_tag=CPT-T1_002;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_002.mRNA;Parent=CPT-T1_002.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 589 592 . + . locus_tag=CPT-T1_002;regulatory_class=ribosome_binding_site;ID=CPT-T1_002.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_002.mRNA; +AY216660.2 GbkToGff CDS 601 2184 . + 0 locus_tag=CPT-T1_002;codon_start=1;transl_table=11;product=terminase large subunit;translation=MGDLIMIQWEDLNATQKLAIKKMSEANFEKMIRIWFQLMQAQQFQPNWHHLYLCHEVEEIIAGRRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSNEFQELWPCKFGTSKDEEMQVLNEDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHMLLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGIEFDQISIPALVTEEYGKTLPDWLQPYFERDVLSSEYVELDGVKHYSFWPSKESVHDLLALREADQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITADTAQKTGELNDYTVFCLWGKKNDKVYFIDGIRGKWEAPDMERQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQRNKDKVTRAMDAQPVIKAGRVVLPEEHPMLAEIIAEHSAFTYDDTHPHDDIVDNFMDAANIELLTIDDPIERMKRLAGMVKR;note=Orf no. 53 see PMID: 14972552;ID=CPT-T1_002.CDS.1;Parent=CPT-T1_002.mRNA; +### +AY216660.2 GbkToGff gene 2230 3522 . + . locus_tag=CPT-T1_003;ID=CPT-T1_003.gene; +AY216660.2 GbkToGff mRNA 2230 23794 . + . locus_tag=CPT-T1_003;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_003.mRNA;Parent=CPT-T1_003.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 2230 2233 . + . locus_tag=CPT-T1_003;regulatory_class=ribosome_binding_site;ID=CPT-T1_003.Shine_Dalgarno_seqeunce.2;Parent=CPT-T1_003.mRNA; +AY216660.2 GbkToGff CDS 2239 3522 . + 0 locus_tag=CPT-T1_003;note=HHPred predicted structural similarity at 99%25 probability to phage T4 portal protein gp20 Protein Data Bank entry 3JA7 over most of protein%3B Orf no. 52 see PMID: 14972552;codon_start=1;transl_table=11;product=portal protein;translation=MKIVKHDGYNDIFNGGADGSPKPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDEKEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVDEEEWSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNNINIREPEETTEPEPGLGEKLEDEN;ID=CPT-T1_003.CDS.1;Parent=CPT-T1_003.mRNA; +AY216660.2 GbkToGff gene 3496 4273 . + . locus_tag=CPT-T1_004;ID=CPT-T1_004.gene; +AY216660.2 GbkToGff mRNA 3496 4273 . + . locus_tag=CPT-T1_004;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_004.mRNA;Parent=CPT-T1_004.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 3496 3499 . + . locus_tag=CPT-T1_004;regulatory_class=ribosome_binding_site;ID=CPT-T1_004.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_004.mRNA; +AY216660.2 GbkToGff CDS 3512 4273 . + 0 locus_tag=CPT-T1_004;note=InterPro domain IPR006528,Orf no. 51 see PMID: 14972552;codon_start=1;transl_table=11;product=capsid morphogenesis protein;translation=MKINGVATQWRYPEMSERAMSRSLQDVAAKLTEKMRDELKPMKFDATDEEIDQTERSLLDYVESLIAPIIGSLSSVALTIYKFNSKQWLRIARNAGGKKNQAVMLLALIGPTAAESWYSGQYNLWRSQVATSIRKFAANMVTDFTDKLRAASGQGKSKDFVVELAKERFGIYRNWAKNRASGIVGTWNSRLMRQRIKDAGVSYYFWRGVMDLREREKHVRWEGKRIAVDSDHVFPGEEYNCRCWAVPDFSTGD;ID=CPT-T1_004.CDS.1;Parent=CPT-T1_004.mRNA; +AY216660.2 GbkToGff gene 4264 5388 . + . locus_tag=CPT-T1_005;ID=CPT-T1_005.gene; +AY216660.2 GbkToGff mRNA 4264 40736 . + . locus_tag=CPT-T1_005;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_005.mRNA;Parent=CPT-T1_005.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 4264 4268 . + . locus_tag=CPT-T1_005;regulatory_class=ribosome_binding_site;ID=CPT-T1_005.Shine_Dalgarno_seqeunce.2;Parent=CPT-T1_005.mRNA; +AY216660.2 GbkToGff CDS 4276 5388 . + 0 locus_tag=CPT-T1_005;note=HHPred predicted structural similarity at 72%25 probability to phage T4 prohead core protein protease gp21 Protein Data Bank entry 5JBL over predicted catalytic third of protein%3B Orf no. 50 see PMID: 14972552;codon_start=1;transl_table=11;product=capsid maturation protease;translation=MKAKQRFDSVKIKAHFDDNGFLVDRPIVARIGAQVYKTPHGDRVEFRPASEVFKQDSLQSFAGKPITVGHVTVTPQNAKDVVVGSCAGAGIASGVGVEVPLSIYSDYAISKAKAKEAGELSVGYTSVDIDKPGWGSNETGEYIFEEDMKQDEAPPEGWVRFDAVQTNIKVNHIALVFKGRAGIAKLNLDAEQEFPYDNNVQLTNEDKQMKKIKIDSVDVEVTEDVANHIEKLTAQIATIQGKADGFEAERDALKVKVDSLPELVKAEVEKQKADAAARAEVTAVAETAGVKHDGLDIKDVKIAVVKAMLDKDVSEKSDAYIDAMFDVAKDSDIMAIQRKAVKGDSIEGGKPEEKNDAAPVTPNSRLSKVM;ID=CPT-T1_005.CDS.1;Parent=CPT-T1_005.mRNA; +AY216660.2 GbkToGff gene 5389 5876 . + . locus_tag=CPT-T1_006;ID=CPT-T1_006.gene; +AY216660.2 GbkToGff mRNA 5389 5876 . + . locus_tag=CPT-T1_006;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_006.mRNA;Parent=CPT-T1_006.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 5389 5392 . + . locus_tag=CPT-T1_006;regulatory_class=ribosome_binding_site;ID=CPT-T1_006.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_006.mRNA; +AY216660.2 GbkToGff CDS 5400 5876 . + 0 locus_tag=CPT-T1_006;note=HHPred predicted structural similarity at 92%25 probability to phage TW1 Protein Data Bank Entry 5WK1 capsid stabilizing protein%2C equivalent to phage lambda gpD dec protein%2C over most of protein%3B Orf no. 49 see PMID: 14972552;codon_start=1;transl_table=11;product=capsid decoration protein;translation=MAQINASYQRDMAIALPGMVADTSKYNIDGACVVNEGDVLVGAAVQVVQAQAVDGHKLVKALTTGTTPYGVAIRSHWQTVNAQNQMIYEDGGAINVMTSGRVWMLSKSTEAPTFGSAVKLDVDGQEKSDGTIETTWTYAGGWTKYKDIQLVEVQLHQL;ID=CPT-T1_006.CDS.1;Parent=CPT-T1_006.mRNA; +AY216660.2 GbkToGff gene 5926 6705 . + . locus_tag=CPT-T1_007;ID=CPT-T1_007.gene; +AY216660.2 GbkToGff mRNA 5926 6705 . + . locus_tag=CPT-T1_007;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_007.mRNA;Parent=CPT-T1_007.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 5926 5929 . + . locus_tag=CPT-T1_007;regulatory_class=ribosome_binding_site;ID=CPT-T1_007.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_007.mRNA; +AY216660.2 GbkToGff CDS 5938 6705 . + 0 locus_tag=CPT-T1_007;note=InterPro domains IPR008964 and IPR003343%2C invasin/intimin cell-adhesion fragments superfamily%3B bacterial Ig-like domain-containing protein%3B Orf no. 48 see PMID: 14972552;codon_start=1;transl_table=11;product=hypothetical protein;translation=MAYENLMLRPACPGNLSDTSTYNIDGACVAQGDIEFGSAVQVVGIVDGVKVVTALSDGGTPYGIAFRSQYEHLSGKILDGEVCNVVSHGRVWALTSLDEAPSLFSKLQFGSGGVVTGGSGYAGWTFAGGFVKHEDGYIIEVRVKQNAFIVPPPPPPVVLVESATITTDKESPQPNNVTIQCVANALPANATDKTGKWSIDATNIATVNPDSGLVTPVGGEVVGDFNITWTANDASKTTATIAYRVEAVPTPEVDV;ID=CPT-T1_007.CDS.1;Parent=CPT-T1_007.mRNA; +AY216660.2 GbkToGff gene 6784 7755 . + . locus_tag=CPT-T1_008;ID=CPT-T1_008.gene; +AY216660.2 GbkToGff mRNA 6784 7755 . + . locus_tag=CPT-T1_008;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_008.mRNA;Parent=CPT-T1_008.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 6784 6787 . + . locus_tag=CPT-T1_008;regulatory_class=ribosome_binding_site;ID=CPT-T1_008.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_008.mRNA; +AY216660.2 GbkToGff CDS 6796 7755 . + 0 locus_tag=CPT-T1_008;codon_start=1;transl_table=11;product=major capsid protein;translation=MTTKKFDEADKSNVEMYLIQAGVKQDAAATMGIWTAQELHRIKSQSYEEDYPVGSALRVFPVTTELSPTDKTFEYMTFDKVGTAQIIADYTDDLPLVDALGTSEFGKVFRLGNAYLISIDEIKAGQATGRPLSTRKASACQLAHDQLVNRLVFKGSAPHKIVSVFNHPNITKITSGKWIDVSTMKPETAEAELTQAIETIETITRGQHRATNILIPPSMRKVLAIRMPETTMSYLDYFKSQNSGIEIDSIAELEDIDGAGTKGVLVYEKNPMNMSIEIPEAFNMLPAQPKDLHFKVPCTSKCTGLTIYRPMTIVLITGV;note=Orf no. 47 see PMID: 14972552;ID=CPT-T1_008.CDS.1;Parent=CPT-T1_008.mRNA; +AY216660.2 GbkToGff gene 7794 8093 . + . locus_tag=CPT-T1_009;ID=CPT-T1_009.gene; +AY216660.2 GbkToGff mRNA 7794 8093 . + . locus_tag=CPT-T1_009;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_009.mRNA;Parent=CPT-T1_009.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 7794 7797 . + . locus_tag=CPT-T1_009;regulatory_class=ribosome_binding_site;ID=CPT-T1_009.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_009.mRNA; +AY216660.2 GbkToGff CDS 7806 8093 . + 0 locus_tag=CPT-T1_009;codon_start=1;transl_table=11;product=hypothetical protein;translation=MAKEKTVVIVNVGVALQMFRLEDGSFAKVLPDEEVTLPASVLDLPGLRCLIAREEIEVKDDSATNRKIRAEMAKITKPDPWDKMSVKELEDGGEY;note=Orf no. 46 see PMID: 14972552;ID=CPT-T1_009.CDS.1;Parent=CPT-T1_009.mRNA; +AY216660.2 GbkToGff gene 8127 8548 . + . locus_tag=CPT-T1_010;ID=CPT-T1_010.gene; +AY216660.2 GbkToGff mRNA 8127 8548 . + . locus_tag=CPT-T1_010;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_010.mRNA;Parent=CPT-T1_010.gene; +AY216660.2 GbkToGff CDS 8138 8548 . + 0 locus_tag=CPT-T1_010;note=HHPred predicted structural similarity at 96%25 probability to Bsubtilis yqbG (myophage protein%2C see PMID 29279385) Protein Data Bank entry 1ZTS over most of protein%3B Orf no. 45 see PMID: 14972552;codon_start=1;transl_table=11;product=head-to-tail connector complex protein;translation=MNQETLIAVVEQMRKLVPALRKVPDETLYAWVEMAELFVCQKTFKDAYVKALALYALHLAFLDGALKGEDEDLESYSRRVTSFSLSGEFSQTFGEVTKNQSGDMMLSTPWGKMFEQLKARRRGRFALMTGLRGGCH;ID=CPT-T1_010.CDS.1;Parent=CPT-T1_010.mRNA; +AY216660.2 GbkToGff gene 8534 8919 . + . locus_tag=CPT-T1_011;ID=CPT-T1_011.gene; +AY216660.2 GbkToGff mRNA 8534 8919 . + . locus_tag=CPT-T1_011;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_011.mRNA;Parent=CPT-T1_011.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 8534 8538 . + . locus_tag=CPT-T1_011;regulatory_class=ribosome_binding_site;ID=CPT-T1_011.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_011.mRNA; +AY216660.2 GbkToGff CDS 8548 8919 . + 0 locus_tag=CPT-T1_011;note=HHPred predicted structural similarity at 96%25 probability to phage SPP1 gp15 Protein Data Bank entry 5A21 over most of protein%3B Orf no. 44 see PMID: 14972552;codon_start=1;transl_table=11;product=head-to-tail connector complex protein;translation=MNYSQIERMARKGVAFFTDPSRPMNLIKQGEYGYDENGFEIPPMEQVIPISGATRRPNAREIDGETIRASDILGIFNNDHEINEGDYIEIDGIRHVVVDARPVQASLEPVAYRPVLRRVSVGG;ID=CPT-T1_011.CDS.1;Parent=CPT-T1_011.mRNA; +AY216660.2 GbkToGff gene 8897 9355 . + . locus_tag=CPT-T1_012;ID=CPT-T1_012.gene; +AY216660.2 GbkToGff mRNA 8897 9355 . + . locus_tag=CPT-T1_012;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_012.mRNA;Parent=CPT-T1_012.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 8897 8901 . + . locus_tag=CPT-T1_012;regulatory_class=ribosome_binding_site;ID=CPT-T1_012.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_012.mRNA; +AY216660.2 GbkToGff CDS 8912 9355 . + 0 locus_tag=CPT-T1_012;codon_start=1;transl_table=11;product=hypothetical protein;translation=MANYQIRRFQGEIDAWINAAESTLEHAIEIFVRDVHDALVSRSPVDTGRFKGNWQITFNEIPNHALNRYDKTGGVVRGEEQAKTYGMFSRGGAITSVHFSNMLIYANALEYGHSQQAPSGVVGLVALRLRSYMADAIKQARRQQNAL;note=Orf no. 43 see PMID: 14972552;ID=CPT-T1_012.CDS.1;Parent=CPT-T1_012.mRNA; +AY216660.2 GbkToGff gene 9332 9743 . + . locus_tag=CPT-T1_013;ID=CPT-T1_013.gene; +AY216660.2 GbkToGff mRNA 9332 9743 . + . locus_tag=CPT-T1_013;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_013.mRNA;Parent=CPT-T1_013.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 9332 9336 . + . locus_tag=CPT-T1_013;regulatory_class=ribosome_binding_site;ID=CPT-T1_013.Shine_Dalgarno_seqeunce.2;Parent=CPT-T1_013.mRNA; +AY216660.2 GbkToGff CDS 9345 9743 . + 0 locus_tag=CPT-T1_013;note=HHPred predicted structural similarity at 96%25 probability to phage lambda minor tail protein U Protein Data Bank entry 3FZ2 over most of protein%3B Orf no. 42 see PMID: 14972552;codon_start=1;transl_table=11;product=minor tail protein;translation=MHYELSAAARAAFLSKYRDFPHYMENRNFTPPKDGGMWLRFNYIEGDTLYLSIDRKCKSYIAIVQIGVVFPPGSGVDEARLKAKEIADFFKDGKMLNVGYIFEGAIVHQIVKHESGWMIPVRFTVRVDTKET;ID=CPT-T1_013.CDS.1;Parent=CPT-T1_013.mRNA; +AY216660.2 GbkToGff gene 9733 10414 . + . locus_tag=CPT-T1_014;ID=CPT-T1_014.gene; +AY216660.2 GbkToGff mRNA 9733 10414 . + . locus_tag=CPT-T1_014;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_014.mRNA;Parent=CPT-T1_014.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 9733 9737 . + . locus_tag=CPT-T1_014;regulatory_class=ribosome_binding_site;ID=CPT-T1_014.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_014.mRNA; +AY216660.2 GbkToGff CDS 9746 10414 . + 0 locus_tag=CPT-T1_014;note=HHPred predicted structural similarity at 99%25 probability to phage lambda major tail protein V Protein Data Bank entry 2K4 over half of protein%3B Orf no. 41 see PMID: 14972552;codon_start=1;transl_table=11;product=major tail protein;translation=MHLPNGAQIFVETSRGVEVEATAITNAENPVATVASKGDLAKGDYVIVTQSTWAKMVSRVLIVTDAQETSITLAGIDTSDTLVFPAGGTMSFAKITGWTEIPCVQEIGQDGGEQQYYTYQCLSDDKEQQIPTFKSAVSLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKASEMRMWAGILSFNDIPSTQVNEMETVELAVSLKGDFTFISSTLASPGA;ID=CPT-T1_014.CDS.1;Parent=CPT-T1_014.mRNA; +AY216660.2 GbkToGff gene 10516 10845 . + . locus_tag=CPT-T1_015;ID=CPT-T1_015.gene; +AY216660.2 GbkToGff mRNA 10516 10845 . + . locus_tag=CPT-T1_015;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_015.mRNA;Parent=CPT-T1_015.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 10516 10520 . + . locus_tag=CPT-T1_015;regulatory_class=ribosome_binding_site;ID=CPT-T1_015.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_015.mRNA; +AY216660.2 GbkToGff CDS 10528 10845 . + 0 locus_tag=CPT-T1_015;codon_start=1;transl_table=11;product=tape measure chaperone frameshift product;translation=MAKFNFVLGQLPDFKLPVTFTMPNGEDATIIFTVRHLSSKEVQDMYAKQGEMNDSDFITKIASGWNLEEEFNEENTRKLVQYYPSAAYNLTATYIKALAGHRAKN;ID=CPT-T1_015.CDS.1;Parent=CPT-T1_015.mRNA; +AY216660.2 GbkToGff gene 10516 11162 . + . locus_tag=CPT-T1_016;ID=CPT-T1_016.gene; +AY216660.2 GbkToGff mRNA 10516 11162 . + . locus_tag=CPT-T1_016;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_016.mRNA;Parent=CPT-T1_016.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 10516 10520 . + . locus_tag=CPT-T1_016;regulatory_class=ribosome_binding_site;ID=CPT-T1_016.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_016.mRNA; +AY216660.2 GbkToGff CDS 10528 10839 . + 0 locus_tag=CPT-T1_016;codon_start=1;transl_table=11;product=tape measure chaperone frameshift product;translation=MAKFNFVLGQLPDFKLPVTFTMPNGEDATIIFTVRHLSSKEVQDMYAKQGEMNDSDFITKIASGWNLEEEFNEENTRKLVQYYPSAAYNLTATYIKALAGHRAKKLKRAVYLLYQKPPTEEQLRSVGLSLSDYEDEEPETIIGDAEMVKAWNVFTSMLTQWRSSGAGAYGLDYNVLPMLFKIYKIEDEELALQDVRIMEAKALEMIAKQNN;note=Orf no. 40 see PMID: 14972552;ID=CPT-T1_016.CDS.1;Parent=CPT-T1_016.mRNA; +AY216660.2 GbkToGff CDS 10839 11162 . + 0 locus_tag=CPT-T1_016;codon_start=1;transl_table=11;product=tape measure chaperone frameshift product;translation=MAKFNFVLGQLPDFKLPVTFTMPNGEDATIIFTVRHLSSKEVQDMYAKQGEMNDSDFITKIASGWNLEEEFNEENTRKLVQYYPSAAYNLTATYIKALAGHRAKKLKRAVYLLYQKPPTEEQLRSVGLSLSDYEDEEPETIIGDAEMVKAWNVFTSMLTQWRSSGAGAYGLDYNVLPMLFKIYKIEDEELALQDVRIMEAKALEMIAKQNN;note=Orf no. 40 see PMID: 14972552;ID=CPT-T1_016.CDS.1;Parent=CPT-T1_016.mRNA; +AY216660.2 GbkToGff gene 11192 14076 . + . locus_tag=CPT-T1_017;ID=CPT-T1_017.gene; +AY216660.2 GbkToGff mRNA 11192 14076 . + . locus_tag=CPT-T1_017;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_017.mRNA;Parent=CPT-T1_017.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 11192 11197 . + . locus_tag=CPT-T1_017;regulatory_class=ribosome_binding_site;ID=CPT-T1_017.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_017.mRNA; +AY216660.2 GbkToGff CDS 11203 14076 . + 0 locus_tag=CPT-T1_017;codon_start=1;transl_table=11;product=tape measure protein;translation=MVDKVAGLSLDVDVSTVQRAVKSLKEFSKANDQAADSMGSLINESEVAKQKAKEHAEQLRRQRKEYEAVEKAIDPTVSKMERLKIASQQLDKLWQQGVVPDETFFRLGEMLDLQNAKLARSRAMLTEEGQAALQEAKAKEQAAVRSKAFMDALNGQVNAIGKTHAELMELKAAELGLSKEAAPLIAKLKDQGRAMNAAGISAGEYRQAMRMLPAQITDVVTSLASGMPVWMVAIQQGGQIKDSFGGIGNTFKVLLSYINPVTAGVGVLVGSLGILAKAGYDSYKSITDIQNALIETGGYAGVTAEELDSVSKKIAQTSNSTIGSIREIVTELASSGKYTREQIQNITKATAEWSASTGKSASQIISEFEKIASDPVKGLKKLNEQYNFLEKGQLTYIDTLSRTKGETEAVSEATKLFADVMEKRMKSIADNATPLEKMWSDIKQWASDAWGWVGDHTLGALNLIIDVVQGTVIQVKMILAKGDEYISNFIASAIKATQSLPGMSDFGADVLKEQENIVKSSRDNYDQLASDLDAINARVEKGEMGYIEAMRQRRTLEKQYSEETKEAIRKEAEEIEKRNRERNKQSKIVRSPTEQFDKELISLRAQLKVLQEHKEIGQKLSAQRKALFTTEATIAVLREASSKRQLSAEEKALLASQERVIELAKQKAEIGDQIVKQQQLNDLTDKSLKFVNEMTAATEQLNASRGLSTRDMERQAELAKITTDYINSGGSEGDEKLQNMIKAQNDYYAAEDAKRADWLAGAESAFADYGDAAMDMYGNVNEIASSALNGMSDMMVQFLTTGKANFEDFAKNIIGMIIKMIAQMVIFNTISGMMGGKTWSFAGGASSGASAASQATPTPAASVFRSVSSGGAAVSLAAAAGSVATSGFNASNSAPKVVNHSGGGTVVDVSGMEVKVDNGSDPRGISQGVEMMFKKMIRESCSQGGEVYNYIQEKTGG;note=Orf no. 38 see PMID: 14972552;ID=CPT-T1_017.CDS.1;Parent=CPT-T1_017.mRNA; +AY216660.2 GbkToGff gene 14067 14432 . + . locus_tag=CPT-T1_018;ID=CPT-T1_018.gene; +AY216660.2 GbkToGff mRNA 14067 14432 . + . locus_tag=CPT-T1_018;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_018.mRNA;Parent=CPT-T1_018.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 14067 14072 . + . locus_tag=CPT-T1_018;regulatory_class=ribosome_binding_site;ID=CPT-T1_018.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_018.mRNA; +AY216660.2 GbkToGff CDS 14079 14432 . + 0 locus_tag=CPT-T1_018;note=similar to lambda tail tip protein M UniProt ID P03737%3B Orf no. 37 see PMID: 14972552;codon_start=1;transl_table=11;product=tail tip protein;translation=MATLDTFGWCTQVQGGGGSLTTTNSDRSIQFGNGYMQLASSGFNTTRREYSVVYAGEDFMAVYDFCNSHRIKPFAWTPPDGKIGIWVVKPNSLGAKPVSRDVMEINVTFMEQFTSME;ID=CPT-T1_018.CDS.1;Parent=CPT-T1_018.mRNA; +AY216660.2 GbkToGff gene 14500 15294 . + . locus_tag=CPT-T1_019;ID=CPT-T1_019.gene; +AY216660.2 GbkToGff mRNA 14500 15294 . + . locus_tag=CPT-T1_019;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_019.mRNA;Parent=CPT-T1_019.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 14500 14503 . + . locus_tag=CPT-T1_019;regulatory_class=ribosome_binding_site;ID=CPT-T1_019.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_019.mRNA; +AY216660.2 GbkToGff CDS 14512 15294 . + 0 locus_tag=CPT-T1_019;note=similar to lambda tail tip protein L UniProt ID P03738%3B Orf no. 36 see PMID: 14972552;codon_start=1;transl_table=11;product=tail tip protein;translation=MSENKKLYDEESGKSLFHNCLQSLYPGEIITLIEVDGSKFGAQVYRFHGENIQYTPEEIMQAQQTGTLPPKEITFRGEKYGARPFGISGISFDSSGKATKPQLTVANIDSRVSAMIRAYNGLMQAKVTIWITQRELINSDGSIADGAYRKLVYYIERPNYVDKSVARFDLTSPYDMDGIMIPSRLTQSVCYFAQRGWYKTGKGCGYNGQNGYFDKDNNPVDDPSLDFCPGTVTACRLRFGANNELDFGGCAVASLQRKNQ;ID=CPT-T1_019.CDS.1;Parent=CPT-T1_019.mRNA; +AY216660.2 GbkToGff gene 15279 16025 . + . locus_tag=CPT-T1_020;ID=CPT-T1_020.gene; +AY216660.2 GbkToGff mRNA 15279 16025 . + . locus_tag=CPT-T1_020;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_020.mRNA;Parent=CPT-T1_020.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 15279 15282 . + . locus_tag=CPT-T1_020;regulatory_class=ribosome_binding_site;ID=CPT-T1_020.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_020.mRNA; +AY216660.2 GbkToGff CDS 15291 16025 . + 0 locus_tag=CPT-T1_020;note=similar to lambda tail tip protein K UniProt ID P03729%3B Orf no. 35 see PMID: 14972552;codon_start=1;transl_table=11;product=tail tip protein;translation=MISAKIKLEIMTHAQEEYPRECCGVVTQKGRVQKYHRIDNVHRDPENHFMMDAVQYACIEDDAESTTIAIVHSHTGDGATTLPSAHDTCMCNEMEVTWIIVSVPEGDMRFVKPEKLPLIGRPWSLGSFDCYGLVMAWHKEHGVELRDRRLNFEWWKPEYGINLYQDYYKQDGFVEIPDQNNPSFGDMVIMQIGQNVPVWNHAGIYLGDNQILHHAFGKLSRRDIYSGWYQDHTVLIVRHKDLKL;ID=CPT-T1_020.CDS.1;Parent=CPT-T1_020.mRNA; +AY216660.2 GbkToGff gene 16009 16621 . + . locus_tag=CPT-T1_021;ID=CPT-T1_021.gene; +AY216660.2 GbkToGff mRNA 16009 16621 . + . locus_tag=CPT-T1_021;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_021.mRNA;Parent=CPT-T1_021.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 16009 16012 . + . locus_tag=CPT-T1_021;regulatory_class=ribosome_binding_site;ID=CPT-T1_021.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_021.mRNA; +AY216660.2 GbkToGff CDS 16022 16621 . + 0 locus_tag=CPT-T1_021;note=single transmembrane domain predicted N-in and C-out%3B similar to lambda tail tip assembly protein I UniProt ID P03730%3B Orf no. 34 see PMID: 14972552;codon_start=1;transl_table=11;product=tail assembly protein;translation=MNDVKVIKLSGSLGRRFGVFHRYAVDSYPEAIRALSSQVDGFKEYMQSEVGSRSKFAIFVDGVNVGHHEEEKFKCAKEIRIVPIPTGSKTGGLFQVVLGAAIMVAAFYTGGASLALMGTMSSSLFMMGGAMVLGGVMQMISPQPGGANFEVQSSKNKPSYAFGGAVNTTAAGYPLPVPYGYRAGGGATFSAGSYAEDMS;ID=CPT-T1_021.CDS.1;Parent=CPT-T1_021.mRNA; +AY216660.2 GbkToGff gene 16688 20217 . + . locus_tag=CPT-T1_022;ID=CPT-T1_022.gene; +AY216660.2 GbkToGff mRNA 16688 20217 . + . locus_tag=CPT-T1_022;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_022.mRNA;Parent=CPT-T1_022.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 16688 16691 . + . locus_tag=CPT-T1_022;regulatory_class=ribosome_binding_site;ID=CPT-T1_022.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_022.mRNA; +AY216660.2 GbkToGff CDS 16699 20217 . + 0 locus_tag=CPT-T1_022;note=similar to phage lambda tip attachment protein J UniProt ID P03749%3B Orf no. 33 see PMID: 14972552;codon_start=1;transl_table=11;product=tail fiber;translation=MIQKVISGSKGGSQKPHNPVEMEDNLISINKIKILLAVSDGEIDETFSLKQLMFNSVPVQNEDGSFNFEGVKAEFRPGTQTQEYIKGMEDSSSEVTVNREVTTDNPYTISVTNKTLSAIRIKMFMPRGVRIESNGDKNGVRVEYEVQQAVDGGSFETVLTDVIEGKTMSGYDRSRRVNLPNFNNQVIFRVVRKTPDSNDSNVVDAIQVKSYAEVIDAKFRYPLTGLLFVEFDSKMFPNQLPTISIRKRWKIVNVPSNYDPESRTYNGNWDGTFKKAWTNNPAWVLYDLMINQRYGLDQKELGIAVDKWALYEAAQYCDQMVPDGKGGTEPRYLCDVIIQSQTDAYKVIRDICSIFRGMSFWNGESISVIIDRPREPAYIFTNDNVVNGDFSYTFASEKSMYTTCNVMFDDEQNMYQQDVEPVFDREATLRFGNNVTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAIADNFWSSNLTMNLSGRLLEVSGSQIFLPFRVDARAGDFIIVNKPDGKPVKRTISSVSADGKTIEVNIGFGFPVKPNTVFAIDRTDIALQQYVVTKIDKGDDDEEFTYKITAVEYDPNKYDEIDYGVNIDDRPTSIVEPDQIPRPKNVQVSSESRIVQGMSVETMIVSWDKVPYAVFYDVQWRKDNGNWQNVPQTANKEVYVEGIYAGNYQVRVRSVAGSGTTSGWSNIVAATLTGKQGEPGRPINLTATDDVVFGIRTKWGFSDGSGDTAYTELQQSPDGTVDNASLLSLIPYPQHEYYHSPMPGGNIVWYRVRTVDRIGNVSQWTDFVRGMASTNVDDIIGEISVDIENSPGYEWLVDNATDNAAQNSANAEAAIENALANDKDAIYMKKENGKRKAEYTKSLKLIADETQARVTAIEQLKASFGDQISASNSELREVIATETEALSREIDQLKAQIGDDIQASLTDIREVIATETEALSREIDQLKAQIGDDIQASLTDIREAIANETEARTQADLTLSARLGNNEAALAQKLDSWSNADSTGAMYGVKLGLKYNGQEYSAGMAMSLVGSGAAVKAQILFEASRFAIMTGMNGQTQYPFVVENGQVILSSAIIKNGFITNAMIGNFIQSNNYVFNQSGWRLDKGGTFENYGSDGEGAMKQTNTTISVRDASGRLRVQIGRLTGSW;ID=CPT-T1_022.CDS.1;Parent=CPT-T1_022.mRNA; +AY216660.2 GbkToGff gene 20251 20568 . + . locus_tag=CPT-T1_023;ID=CPT-T1_023.gene; +AY216660.2 GbkToGff mRNA 20251 20568 . + . locus_tag=CPT-T1_023;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_023.mRNA;Parent=CPT-T1_023.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 20251 20255 . + . locus_tag=CPT-T1_023;regulatory_class=ribosome_binding_site;ID=CPT-T1_023.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_023.mRNA; +AY216660.2 GbkToGff CDS 20263 20568 . + 0 locus_tag=CPT-T1_023;codon_start=1;transl_table=11;product=hypothetical protein;translation=MAYGISTWDANGVYNNYGIKPITVVGWNFLSAGQNSASFSYQVPPGMHVNYVISLDDGAISGPGRKIIASGNTITVTPTNSPGPNVYPSSNCYLIAYLEND;note=Orf no. 32 see PMID: 14972552;ID=CPT-T1_023.CDS.1;Parent=CPT-T1_023.mRNA; +AY216660.2 GbkToGff gene 20556 21257 . + . locus_tag=CPT-T1_024;ID=CPT-T1_024.gene; +AY216660.2 GbkToGff mRNA 20556 21257 . + . locus_tag=CPT-T1_024;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_024.mRNA;Parent=CPT-T1_024.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 20556 20559 . + . locus_tag=CPT-T1_024;regulatory_class=ribosome_binding_site;ID=CPT-T1_024.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_024.mRNA; +AY216660.2 GbkToGff CDS 20568 21257 . + 0 locus_tag=CPT-T1_024;note=InterPro domain IPR013750%3B GHMP kinase domain- containing protein%3B Orf no. 31 see PMID: 14972552;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSYGAFIDVNGNPFITPLSTPFALYARGEIQSVNVSGSQVAERYVRIPTGVPVIAFCKTTNTQQGTALSAFTFRSGPNVGTVYIRGTNPANQSYTLTYYIFAIFEQSLPRWGMAIWDASGKLVLTNETKVLSDLVTIGTPGYAGGGLNIDTTLSGSYAVVPTILGNYQVVIGRLPTGQPIIGNSTAGSSCRYNGSTTRINAAATTAAGQIMNTTNNGNIITAIKTAAYD;ID=CPT-T1_024.CDS.1;Parent=CPT-T1_024.mRNA; +AY216660.2 GbkToGff gene 21279 21518 . - . locus_tag=CPT-T1_025;ID=CPT-T1_025.gene; +AY216660.2 GbkToGff mRNA 21279 21518 . - . locus_tag=CPT-T1_025;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_025.mRNA;Parent=CPT-T1_025.gene; +AY216660.2 GbkToGff CDS 21279 21506 . - 0 locus_tag=CPT-T1_025;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKKLITIIAAAFILTGCSSMPERTCTAIYESGGAEYSVYVFGSKMRGKEMVLRAGYPFSFNYVSEKNFKSHDCSI;note=Orf no. 30 see PMID: 14972552;ID=CPT-T1_025.CDS.1;Parent=CPT-T1_025.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 21515 21518 . - . locus_tag=CPT-T1_025;regulatory_class=ribosome_binding_site;ID=CPT-T1_025.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_025.mRNA; +AY216660.2 GbkToGff gene 21755 21906 . + . locus_tag=CPT-T1_026;ID=CPT-T1_026.gene; +AY216660.2 GbkToGff mRNA 21755 21906 . + . locus_tag=CPT-T1_026;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_026.mRNA;Parent=CPT-T1_026.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 21755 21758 . + . locus_tag=CPT-T1_026;regulatory_class=ribosome_binding_site;ID=CPT-T1_026.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_026.mRNA; +AY216660.2 GbkToGff CDS 21766 21906 . + 0 locus_tag=CPT-T1_026;codon_start=1;transl_table=11;product=hypothetical protein;translation=MIRQISIMYVQNLINLDSICRYLCISNKKRLQVLRNRQRIKIYLSH;ID=CPT-T1_026.CDS.1;Parent=CPT-T1_026.mRNA; +AY216660.2 GbkToGff gene 22020 23098 . + . locus_tag=CPT-T1_027;ID=CPT-T1_027.gene; +AY216660.2 GbkToGff mRNA 22020 23098 . + . locus_tag=CPT-T1_027;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_027.mRNA;Parent=CPT-T1_027.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 22020 22024 . + . locus_tag=CPT-T1_027;regulatory_class=ribosome_binding_site;ID=CPT-T1_027.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_027.mRNA; +AY216660.2 GbkToGff CDS 22034 23098 . + 0 locus_tag=CPT-T1_027;codon_start=1;transl_table=11;product=exodeoxyribonuclease VIII;translation=MFQVFTSSQLSNDEYHRNEGWASEYVSGSSLAEIYQTCPANWRFKKNETTKALEFGTQSHTNFESRDLFTATYARCPAPSEFKDLITSQAALAAKLKSFGLKGTSGKQYPDLIKMMVDCGEELNVQYLIELIAEAEARAEGKQLVDADKYDACMKMRAILEQNPDHEACINSETAQREISIFGEISGVKVKVRLDHLDYKENVPGRVLTGYDENGDPVFEDVIFPEALIITDFKTTMSANPLEFPRLAYNHGYYLKMALQHDLLRRAIQAGAFEGNFPEDIPIVVRLLAQEKKEPYIALAYRMTMEQIRIGRNQYISVVHTYKACSEMDVWPGYAGDASEIELETPSWVRYQNK;note=Orf no. 29 see PMID: 14972552;ID=CPT-T1_027.CDS.1;Parent=CPT-T1_027.mRNA; +AY216660.2 GbkToGff gene 23129 23820 . + . locus_tag=CPT-T1_028;ID=CPT-T1_028.gene; +AY216660.2 GbkToGff mRNA 23129 23820 . + . locus_tag=CPT-T1_028;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_028.mRNA;Parent=CPT-T1_028.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 23129 23133 . + . locus_tag=CPT-T1_028;regulatory_class=ribosome_binding_site;ID=CPT-T1_028.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_028.mRNA; +AY216660.2 GbkToGff CDS 23140 23820 . + 0 locus_tag=CPT-T1_028;note=InterPro domain IPR007499%3B Orf no. 28 see PMID: 14972552;codon_start=1;transl_table=11;product=recombinase;translation=MHLIHQSGEVKMQLSPETNEILPALFNARNKFAKAKKDAKNNHLKNSYATLDAMMAAVSPALTDNDIMILQSMLDTSTETTFHLETMLIHKSGQWAKFFMMMPIAKRDPQGVGSAMTYARRYSLAAALGISQSDDDAQLAVKSVKDWKKELDACEDIESLKDVWANAYRQTDTASKSIIQDHYNALKAKFEIGKARGIRPAQPEQKKQVEATSAKPVQSQSITNFE;ID=CPT-T1_028.CDS.1;Parent=CPT-T1_028.mRNA; +AY216660.2 GbkToGff gene 23854 24289 . + . locus_tag=CPT-T1_029;ID=CPT-T1_029.gene; +AY216660.2 GbkToGff mRNA 23854 24289 . + . locus_tag=CPT-T1_029;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_029.mRNA;Parent=CPT-T1_029.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 23854 23858 . + . locus_tag=CPT-T1_029;regulatory_class=ribosome_binding_site;ID=CPT-T1_029.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_029.mRNA; +AY216660.2 GbkToGff CDS 23867 24289 . + 0 locus_tag=CPT-T1_029;note=InterPro domain IPR012340,Orf no. 27 see PMID: 14972552;codon_start=1;transl_table=11;product=single-stranded DNA-binding protein;translation=MHIITGEIRKEPKILERNGGNTYIIELAESYKPRDGDREYTNYTFFFSDGGKPGLADWYREAFQVGRVISVSCETLKISSREHNGMIYNSLQAADFPKLVFSQRGQSNQQQRAPQQQQRSQQQSQPQPNQQSTFDDDIPF;ID=CPT-T1_029.CDS.1;Parent=CPT-T1_029.mRNA; +AY216660.2 GbkToGff gene 24351 26550 . - . locus_tag=CPT-T1_030;ID=CPT-T1_030.gene; +AY216660.2 GbkToGff mRNA 24351 26550 . - . locus_tag=CPT-T1_030;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_030.mRNA;Parent=CPT-T1_030.gene; +AY216660.2 GbkToGff CDS 24351 26537 . - 0 locus_tag=CPT-T1_030;codon_start=1;transl_table=11;product=hypothetical protein;translation=MALYRRGTASMDADGTVHGTDTKWKDQLALIRVGATIVFLEQPIKLAVISDIVSDTELKAISTDGQTAADGKYVILLNDSLTVNGLAQNVAETLRYYQSKETEIASALDIIADLDMDNLNNIVQEIKSNKSAAEAAQNQAELARDSANSARDESISIKNQTQQISDSAIGSINAAKDKAITNVQQKENSAVTHINSEEAAAIQAINDAKGDLSGYVNDAQTAAQTATSAKNDAQAARDAAVSAKDAAAVSAQEAQDAANSVNADNLLTKDGNLSGLADKEQSKKNLAVNRLNQPRGDLTEIYSNDDRTGFKLIVKDSGDWGAMTHDGSENKALGVNFGGTGGTTEEQARTSLKVYKLDRTNLGEKHLDSITGEGDGPGIYMQSSSALATASRGYPEATAGMLEVLPNGANGASACIQRFTPFTYLGTAPESGNSQNEYARAGRGTFYIRMKNGNNAKFSPWIPFQASSSGNVVSSPASNEKSSWVDYVNALSSQPSSLASYNVNSVGWVTAISVRHRNGQGDGSAFGFVIEDASMTSPHYKDVRLRKQTGAGQWQSTQVIWNTGNTTVDSNGFIKRASPIVDIFGNGSHRTNDESEGCTVERISTGEYLIRGCLSLNSDLAWGGVNGGIEIPKDINGQPILWVDYDVNPDGSLVIKTYHRTHDNAPSFARNHKDGYSDGDPIDIPSDVFVSVRVEMPNDSIYNKKVEECKRNHERMVSGEFVESLKNT;note=Orf no. 26 see PMID: 14972552;ID=CPT-T1_030.CDS.1;Parent=CPT-T1_030.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 26546 26550 . - . locus_tag=CPT-T1_030;regulatory_class=ribosome_binding_site;ID=CPT-T1_030.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_030.mRNA; +AY216660.2 GbkToGff gene 26447 26600 . - . locus_tag=CPT-T1_031;ID=CPT-T1_031.gene; +AY216660.2 GbkToGff mRNA 26447 26600 . - . locus_tag=CPT-T1_031;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_031.mRNA;Parent=CPT-T1_031.gene; +AY216660.2 GbkToGff CDS 26447 26590 . - 0 locus_tag=CPT-T1_031;codon_start=1;transl_table=11;product=hypothetical protein;translation=MIKSLLSNSCYLLKEFILWLYIDAVLHQWMQTVRFTEPIQNGKISLL;note=Orf no. 25 see PMID: 14972552;ID=CPT-T1_031.CDS.1;Parent=CPT-T1_031.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 26597 26600 . - . locus_tag=CPT-T1_031;regulatory_class=ribosome_binding_site;ID=CPT-T1_031.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_031.mRNA; +AY216660.2 GbkToGff gene 26638 27585 . - . locus_tag=CPT-T1_032;ID=CPT-T1_032.gene; +AY216660.2 GbkToGff mRNA 26638 27585 . - . locus_tag=CPT-T1_032;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_032.mRNA;Parent=CPT-T1_032.gene; +AY216660.2 GbkToGff CDS 26638 27573 . - 0 locus_tag=CPT-T1_032;codon_start=1;transl_table=11;product=DNA primase;translation=MNEEFMMFQKEDVLPYMKGLWREAFQSICGLPNNVFNKKHQPCPNCGGKDRFRWTDNLNTPGDGGAICNSCGNDSGIGWLMKLTGMPYSECVNILGRFLGKVPQEYIVKANKKARRTPVSGVNVMMAEHEAVMKVMERTEKRVNTPLSVFESLPTESFDVGIKRSEDGRESVFHTIPCQLVHEDGLDDEFCNILIIDEEGRESFYAKKYTSCSVAVTGKTEKAIYLCLNWIDAQHIAFHTKQEVWACFTPENLEMVAYRYKGDREVRVACEPSDKDTLYMADDRQLKIIIPNPGGYRSGMQAKLFSASDLL;note=alternative start codon to Orf no. 24 see PMID: 14972552;ID=CPT-T1_032.CDS.1;Parent=CPT-T1_032.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 27582 27585 . - . locus_tag=CPT-T1_032;regulatory_class=ribosome_binding_site;ID=CPT-T1_032.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_032.mRNA; +AY216660.2 GbkToGff gene 27635 28098 . - . locus_tag=CPT-T1_033;ID=CPT-T1_033.gene; +AY216660.2 GbkToGff mRNA 27635 28098 . - . locus_tag=CPT-T1_033;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_033.mRNA;Parent=CPT-T1_033.gene; +AY216660.2 GbkToGff CDS 27635 28087 . - 0 locus_tag=CPT-T1_033;note=HHPred predicted structural similarity at 97%25 probability to phage P22 repression protein C2 Protein Data Bank entry 2R1J over most of protein and phage lambda repressor entry 3BDN%3BOrf no. 23 see PMID: 14972552;codon_start=1;transl_table=11;product=transcriptional regulator;translation=MSIQRIAESTGEIDKRHINGNNGTRRGKDKKPRQRCGFYIHKEETRAGLRARLDALIEYYGGPAACAKALKVSNQTVQGWKERNMISWQGAEAAHRAYRRQGCKGFRAAWLRFDLKFDGNGKCLEKRCKNKKFMRVVKREDIGTTNSIFS;ID=CPT-T1_033.CDS.1;Parent=CPT-T1_033.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 28095 28098 . - . locus_tag=CPT-T1_033;regulatory_class=ribosome_binding_site;ID=CPT-T1_033.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_033.mRNA; +AY216660.2 GbkToGff gene 28168 30199 . + . locus_tag=CPT-T1_034;ID=CPT-T1_034.gene; +AY216660.2 GbkToGff mRNA 28168 30199 . + . locus_tag=CPT-T1_034;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_034.mRNA;Parent=CPT-T1_034.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 28168 28171 . + . locus_tag=CPT-T1_034;regulatory_class=ribosome_binding_site;ID=CPT-T1_034.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_034.mRNA; +AY216660.2 GbkToGff CDS 28181 30199 . + 0 locus_tag=CPT-T1_034;codon_start=1;transl_table=11;product=DNA helicase;translation=MTMNIKKQIALLGDDYIKRTQERFTVGEVVPYPYQVVAYAEIAKRLSNYEHPFFVKASVSAGKTIIFAMVAKQCQKMGLKMLVLARQGEIVDQDSEEIDNFGVTNSIFSASLGIKSCYFPIVVGSEGTVANGLDNELADFVPHVIGIDECHQVDWEDLAQAIEGKETMEQMRGEKGKIIMDGDIPLIGNDGKPLLGTKRSQYTIVIMEMMRRCKKVHGHDLRIFGMTGSEFRGVVPILVENPKALGFWRERVTDIDTNYLIEFGSVVPTIFGSTDGVHYDLDKFKASSEDGVQDFTEKDMKAMEDEILHDKSLTQRIMQMVAKKAEERNAVLITCAGVRHCKEAAAALPPGSTYAIITGDTDNKARKKILDDVRAGKIKYTFQVMALTTGVNVPNWDFSVILRKIGSLTLLIQLLGRGMRLLKSWQVAEGMVKQDHLVWDFAGTMDELGQLYFDPILEQAQFQKRFENGKDPKTCPKCGCVNSFYARRCVNVIDGERCDHFWTSQICEDQVDERTGKILVKGCGAENDVVARVCRCCDASLVDPNLKLSGKAYTKNDWYEVKNFEVTLTKNQKGIIYKYTLINDDGDEFKAYEKFFPESDSKICGTLWKTKGVLPHVSDPKMRRYFIGMKNAIKILQYSHHIAHPVRVTHRRNQKKEDIISRKDFGMEDIPE;note=Orf no. 22 see PMID: 14972552;ID=CPT-T1_034.CDS.1;Parent=CPT-T1_034.mRNA; +AY216660.2 GbkToGff gene 30181 30612 . + . locus_tag=CPT-T1_035;ID=CPT-T1_035.gene; +AY216660.2 GbkToGff mRNA 30181 30612 . + . locus_tag=CPT-T1_035;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_035.mRNA;Parent=CPT-T1_035.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 30181 30185 . + . locus_tag=CPT-T1_035;regulatory_class=ribosome_binding_site;ID=CPT-T1_035.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_035.mRNA; +AY216660.2 GbkToGff CDS 30196 30612 . + 0 locus_tag=CPT-T1_035;note=HHPred predicted structural similarity at 97%25 probability to B. subtilis recombination protein U/resolvase Protein Data Bank entry 1ZP7 over most of protein%3B Orf no. 21 see PMID: 14972552;codon_start=1;transl_table=11;product=Holliday junction resolvase;translation=MITDKGDYLEFYERDTSDTRKEDAHQVDCVSWLKYNFPHLLFWHTVNEGEKTITSALRDEQAGLLKGVSDFVILIGVNSRYPFAAIELKRVNKSGKGKASPVSDKQREFLQKVRERGGFSAVAYGFGQFKIAIYEMMK;ID=CPT-T1_035.CDS.1;Parent=CPT-T1_035.mRNA; +AY216660.2 GbkToGff gene 30669 31393 . + . locus_tag=CPT-T1_036;ID=CPT-T1_036.gene; +AY216660.2 GbkToGff mRNA 30669 31393 . + . locus_tag=CPT-T1_036;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_036.mRNA;Parent=CPT-T1_036.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 30669 30672 . + . locus_tag=CPT-T1_036;regulatory_class=ribosome_binding_site;ID=CPT-T1_036.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_036.mRNA; +AY216660.2 GbkToGff CDS 30680 31393 . + 0 locus_tag=CPT-T1_036;codon_start=1;transl_table=11;product=DNA adenine methyltransferase;translation=MKDFNDIETIDFAETGCSFTREAIASGGYYQALKTPTCKEISGRRYKGTNTPDAVRDLWSTPREVIAYLEGRYGKYDLDAAASEENKVCEKFYSQETNCLKRWWGKNKHVWLNPPYSRPDIFVKKAIEQMEHNNQIDMLLPADNSTAWFTEARQNAAEIIWIEADLTEDIDGNEYARSGRLAFISGETGKAVDGNNKGSVIFIMRELKEGEVQQTHYIPITSICPSVKNKRAKVRKV;note=Orf no. 20 see PMID: 14972552;ID=CPT-T1_036.CDS.1;Parent=CPT-T1_036.mRNA; +AY216660.2 GbkToGff gene 31377 31641 . + . locus_tag=CPT-T1_037;ID=CPT-T1_037.gene; +AY216660.2 GbkToGff mRNA 31377 31641 . + . locus_tag=CPT-T1_037;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_037.mRNA;Parent=CPT-T1_037.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 31377 31380 . + . locus_tag=CPT-T1_037;regulatory_class=ribosome_binding_site;ID=CPT-T1_037.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_037.mRNA; +AY216660.2 GbkToGff CDS 31393 31641 . + 0 locus_tag=CPT-T1_037;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSEKMVPVKLTEQGLWLLYRATCCEIMERNGLTQDVIGCDLWEFTSSLDMSFDEIKNEYIENWPSIIQKDVEELKADTIVQH;note=alternative start codon to Orf no. 19 see PMID: 14972552;ID=CPT-T1_037.CDS.1;Parent=CPT-T1_037.mRNA; +AY216660.2 GbkToGff gene 31695 31917 . + . locus_tag=CPT-T1_038;ID=CPT-T1_038.gene; +AY216660.2 GbkToGff mRNA 31695 31917 . + . locus_tag=CPT-T1_038;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_038.mRNA;Parent=CPT-T1_038.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 31695 31698 . + . locus_tag=CPT-T1_038;regulatory_class=ribosome_binding_site;ID=CPT-T1_038.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_038.mRNA; +AY216660.2 GbkToGff CDS 31708 31917 . + 0 locus_tag=CPT-T1_038;codon_start=1;transl_table=11;product=hypothetical protein;translation=MARINANFFNIAQQSAKMAVHITNKQGGNFDWDIAMNFLKMSYYRCSVEEVEGFISDVEKLTNADKKAR;note=Orf no. 18 see PMID: 14972552;ID=CPT-T1_038.CDS.1;Parent=CPT-T1_038.mRNA; +AY216660.2 GbkToGff gene 31881 32167 . + . locus_tag=CPT-T1_039;ID=CPT-T1_039.gene; +AY216660.2 GbkToGff mRNA 31881 32167 . + . locus_tag=CPT-T1_039;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_039.mRNA;Parent=CPT-T1_039.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 31881 31884 . + . locus_tag=CPT-T1_039;regulatory_class=ribosome_binding_site;ID=CPT-T1_039.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_039.mRNA; +AY216660.2 GbkToGff CDS 31895 32167 . + 0 locus_tag=CPT-T1_039;codon_start=1;transl_table=11;product=hypothetical protein;translation=MLIKKQGKREVWEHAKECGISDDIALIAKYFDIKDVSIISNGKISFMEGMPRKMQRVPATPSLEFYREEGKRIERERKSTKNGKSSRLKY;ID=CPT-T1_039.CDS.1;Parent=CPT-T1_039.mRNA; +AY216660.2 GbkToGff gene 32099 32399 . + . locus_tag=CPT-T1_040;ID=CPT-T1_040.gene; +AY216660.2 GbkToGff mRNA 32099 32399 . + . locus_tag=CPT-T1_040;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_040.mRNA;Parent=CPT-T1_040.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 32099 32102 . + . locus_tag=CPT-T1_040;regulatory_class=ribosome_binding_site;ID=CPT-T1_040.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_040.mRNA; +AY216660.2 GbkToGff CDS 32112 32399 . + 0 locus_tag=CPT-T1_040;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSEKENPQKTASLPGLNINADEYQAIWIGKKQVKQIPFSDWLPPDFVNVLCTIGIEQELHIGYYSPGRNSMMLEVDGKLVEFKSSDLGFWLKAVA;note=Orf no. 17 see PMID: 14972552;ID=CPT-T1_040.CDS.1;Parent=CPT-T1_040.mRNA; +AY216660.2 GbkToGff gene 32467 33611 . + . locus_tag=CPT-T1_041;ID=CPT-T1_041.gene; +AY216660.2 GbkToGff mRNA 32467 33611 . + . locus_tag=CPT-T1_041;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_041.mRNA;Parent=CPT-T1_041.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 32467 32470 . + . locus_tag=CPT-T1_041;regulatory_class=ribosome_binding_site;ID=CPT-T1_041.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_041.mRNA; +AY216660.2 GbkToGff CDS 32478 33611 . + 0 locus_tag=CPT-T1_041;note=HHPred predicted structural similarity at 99%25 probability to E. coli exonuclease SbcD Protein Data Bank entry 4LTY over two thirds of protein%3B Orf no. 16 see PMID: 14972552;codon_start=1;transl_table=11;product=exonuclease;translation=MSQAKITTEQLIEERMSGLTLREIAEKYGMHIRTVEARHAKLAKEGHFHGNEHVAKMVPEGFMVKGTSTMIDAEGNEKIRWVKTSVDNERLEVLMEKAREAFCSELPKAIPSESPDVSFDEDTLAMYPVFDLHIGALAHKHECGENYDTATAEKVMNGFFDYAVDKAPNSKNAVLVLGGDFLHYDSLESKTPASGHYLDSDSRYAKLVYVAIRSVRRAVSRMLEKHQVIDIKAISGNHDESGMVWLRAALAAFYEDEPRVNVDVSPAAMMMTSFGKTLIGYTHGHQMRKADTRLSVMATDFRKLFGQSDYVYTHSGHWHSQKITETNLGIDEVHGQLGSPDAYSANGGWRSQRQAAVIVYHKEFGEVGRFICRPEMF;ID=CPT-T1_041.CDS.1;Parent=CPT-T1_041.mRNA; +AY216660.2 GbkToGff gene 33673 34166 . + . locus_tag=CPT-T1_042;ID=CPT-T1_042.gene; +AY216660.2 GbkToGff mRNA 33673 34166 . + . locus_tag=CPT-T1_042;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_042.mRNA;Parent=CPT-T1_042.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 33673 33677 . + . locus_tag=CPT-T1_042;regulatory_class=ribosome_binding_site;ID=CPT-T1_042.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_042.mRNA; +AY216660.2 GbkToGff CDS 33684 34166 . + 0 locus_tag=CPT-T1_042;note=similar to phage T7 protein 3.8%3B InterPro domain IPR003615%3B Orf no. 15 see PMID: 14972552;codon_start=1;transl_table=11;product=HNH endonuclease;translation=MNWHEHYEYRDGVLYHKVKPCRRHDVNIGDVAGRVAKNGYHYVVHKNRPYKRSRVIWEMFNGEIPDGFVIDHLNHNATDDRIDNLECKPRRENMVNVKLRIDSTTGVTGVSRKRDNKWRAYITIMGKQKCKSFDTFEEACAQRIEWSVTHDFHPNHGGTY;ID=CPT-T1_042.CDS.1;Parent=CPT-T1_042.mRNA; +AY216660.2 GbkToGff gene 34226 34415 . + . locus_tag=CPT-T1_043;ID=CPT-T1_043.gene; +AY216660.2 GbkToGff mRNA 34226 34415 . + . locus_tag=CPT-T1_043;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_043.mRNA;Parent=CPT-T1_043.gene; +AY216660.2 GbkToGff CDS 34239 34415 . + 0 locus_tag=CPT-T1_043;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKIVKCIRNDSKTLPFRVNQIYSVGYDFGGGLFEIYDGRGSAIQTPLNGHYLEFIEID;note=Orf no. 14 see PMID: 14972552;ID=CPT-T1_043.CDS.1;Parent=CPT-T1_043.mRNA; +AY216660.2 GbkToGff gene 34525 34749 . + . locus_tag=CPT-T1_044;ID=CPT-T1_044.gene; +AY216660.2 GbkToGff mRNA 34525 34749 . + . locus_tag=CPT-T1_044;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_044.mRNA;Parent=CPT-T1_044.gene; +AY216660.2 GbkToGff CDS 34534 34749 . + 0 locus_tag=CPT-T1_044;note=1 transmembrane domain%2C predicted N-out and C-in%3B Orf no. 13 see PMID: 14972552;codon_start=1;transl_table=11;product=pinholin class 2;translation=MKEFLTAATSSTGGASLVGAATGQLYIAGATFICFLLFGAWGAYWKYRDSKAIQEALNDGDLNKALKIRGR;ID=CPT-T1_044.CDS.1;Parent=CPT-T1_044.mRNA; +AY216660.2 GbkToGff gene 34739 35237 . + . locus_tag=CPT-T1_045;ID=CPT-T1_045.gene; +AY216660.2 GbkToGff mRNA 34739 35237 . + . locus_tag=CPT-T1_045;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_045.mRNA;Parent=CPT-T1_045.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 34739 34743 . + . locus_tag=CPT-T1_045;regulatory_class=ribosome_binding_site;ID=CPT-T1_045.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_045.mRNA; +AY216660.2 GbkToGff CDS 34749 35237 . + 0 locus_tag=CPT-T1_045;codon_start=1;transl_table=11;product=SAR endolysin;translation=MSLKNNVIGASIGAALTLTPTLLERIEGIEYEVYYDIAGVPTVCSGITGPDVIPGKKYTKRECDALLIKHIGVAQRYVDKKVKVDIPVTMRASLYSFTFNVGTGAFGSSTMLKLINQRKHKEACNQLWRWVYYYNPKTKKREVSRGIKNRRAEEYAYCVKEL;note=Orf no. 12 see PMID: 14972552;ID=CPT-T1_045.CDS.1;Parent=CPT-T1_045.mRNA; +AY216660.2 GbkToGff gene 35227 35638 . + . locus_tag=CPT-T1_046;ID=CPT-T1_046.gene; +AY216660.2 GbkToGff mRNA 35227 35638 . + . locus_tag=CPT-T1_046;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_046.mRNA;Parent=CPT-T1_046.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 35227 35230 . + . locus_tag=CPT-T1_046;regulatory_class=ribosome_binding_site;ID=CPT-T1_046.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_046.mRNA; +AY216660.2 GbkToGff CDS 35237 35638 . + 0 locus_tag=CPT-T1_046;note=PMID 30135120 shows molecular function of unimolecular spanin%3B Orf no. 11 see PMID: 14972552;codon_start=1;transl_table=11;product=u-spanin;translation=MKLKKTCIAITVAVGVISLSGCSTASALSGLLSDSPDVTAQVGAENTKQLAGVTAKADDKREVKVSDSNIGKIDSSVKKSVEVSTIQANTVNAESITVTKSGSWYDPVVCWILVFIVLLLFYFLIRKHEKKEA;ID=CPT-T1_046.CDS.1;Parent=CPT-T1_046.mRNA; +AY216660.2 GbkToGff gene 35761 36179 . - . locus_tag=CPT-T1_047;ID=CPT-T1_047.gene; +AY216660.2 GbkToGff mRNA 35761 36179 . - . locus_tag=CPT-T1_047;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_047.mRNA;Parent=CPT-T1_047.gene; +AY216660.2 GbkToGff CDS 35761 36168 . - 0 locus_tag=CPT-T1_047;note=HHPred predicted structural similarity at 88%25 probability to S. epidermidis RipR transcriptional regulator Protein Data Bank entry 3IWF over most of protein%3B Orf no. 10 see PMID: 14972552;codon_start=1;transl_table=11;product=HTH domain-containing protein;translation=MLLLLDLFRFCEGYDKYTRQHIAKFIYAHKESERFAKAAGMTRREFTSALSKEFCARCVTEGYLDCKGGFYWCKGKIKRPVMMKLMCIDGYNNRYTWEMMHIGEMSDEDLFGERRNIDRSERRIVRKAPAYERRI;ID=CPT-T1_047.CDS.1;Parent=CPT-T1_047.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 36176 36179 . - . locus_tag=CPT-T1_047;regulatory_class=ribosome_binding_site;ID=CPT-T1_047.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_047.mRNA; +AY216660.2 GbkToGff gene 36173 37755 . - . locus_tag=CPT-T1_048;ID=CPT-T1_048.gene; +AY216660.2 GbkToGff mRNA 36173 37755 . - . locus_tag=CPT-T1_048;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_048.mRNA;Parent=CPT-T1_048.gene; +AY216660.2 GbkToGff CDS 36173 37741 . - 0 locus_tag=CPT-T1_048;note=HHPred predicted structural similarity at 95%25 probability to E. coli AAA ATPase ravA Protein Data Bank entry 3NBX over AAA domain of protein%3B Orf no. 9 see PMID: 14972552;codon_start=1;transl_table=11;product=putative ATPase;translation=MFNIKPKLNYQQIIEIANSTGVNPVAIAIRENSYGDSVSFWQDPIDINSGNDKFPLISLGGDNLVFEYAKAKAESVQFPVSSAYAHFIGCISAAMLGKFWVQYHGEEQPTALYMVISQPPSTGKSAINSAAITPMRAEIQRLNEERKKERIRLTSQLRQIEKEIKNDPKGNTTAALYEDKEKLEEKIKKMADIVFAVSDPTPEGLAKVAAVQGHFSVISDEATAINTLLGLTYGGSDKKSNSELILKAWDKNHMEVARSNQDNNLSLCPVGSICVIAQDETIKGIMDAGQRGIGVSERFLLVREEPLLGTRILCDENGDALYKEVDRGLVSKYYRLVHNIMKEDNVVLSVSRNAMRELNLARQAMEPDFAAGGKYSHSMLRGHLGKFDKHALRIASVLHTIKNWEGESPNRSNREIDLETMQEAIMIFNELSRTYLSSASAAGYAGDEAESRKLIDVITEIAKKNKGRAPIHSIVAKCRNVTPFNGQQKVAERIDSLLITLEEMNYTCRIDDIVFINPRLMG;ID=CPT-T1_048.CDS.1;Parent=CPT-T1_048.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 37751 37755 . - . locus_tag=CPT-T1_048;regulatory_class=ribosome_binding_site;ID=CPT-T1_048.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_048.mRNA; +AY216660.2 GbkToGff gene 37741 38294 . - . locus_tag=CPT-T1_049;ID=CPT-T1_049.gene; +AY216660.2 GbkToGff mRNA 37741 38294 . - . locus_tag=CPT-T1_049;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_049.mRNA;Parent=CPT-T1_049.gene; +AY216660.2 GbkToGff CDS 37741 38280 . - 0 locus_tag=CPT-T1_049;note=InterPro domain IPR003615%3B similar to phage T7 protein 3.8%3B Orf no. 8 see PMID: 14972552;codon_start=1;transl_table=11;product=HNH endonuclease;translation=MKDELKYVSGRLYWKEWRIGRRRNLLAGTVNKKGYRSICFPGGVFEYAHRIVWKIHYGNIPEGMDVDHINHERDDNRIENLRLVTRQDNLRNKGVVSSNTGVMGVYWNKKTNRYTANITINKKTKHLGTFMTLDAAAKARKEAERLYGFHENHGSNSTFCKTRVPLTVYHSRRQLRSLL;ID=CPT-T1_049.CDS.1;Parent=CPT-T1_049.mRNA; +AY216660.2 GbkToGff gene 38277 38706 . - . locus_tag=CPT-T1_050;ID=CPT-T1_050.gene; +AY216660.2 GbkToGff mRNA 38277 38706 . - . locus_tag=CPT-T1_050;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_050.mRNA;Parent=CPT-T1_050.gene; +AY216660.2 GbkToGff CDS 38277 38693 . - 0 locus_tag=CPT-T1_050;note=HHPred predicted structural similarity at 88%25 probability to S. epidermidis RipR transcriptional regulator Protein Data Bank entry 3IWF over most of protein%3B Orf no. 7 see PMID: 14972552;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKSIKLKCTSADKITGFEVNNLYKGRERYDDTREVKLKCGKYLKLEKHDELHIHGSDEIFFAKFTELKTKTLKCTGLDHRNPMKKSFKVGKRYQVESGRALGGVAGYIFDEDGCRWTLFREEVGFSIADGTTFESKYL;ID=CPT-T1_050.CDS.1;Parent=CPT-T1_050.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 38702 38706 . - . locus_tag=CPT-T1_050;regulatory_class=ribosome_binding_site;ID=CPT-T1_050.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_050.mRNA; +AY216660.2 GbkToGff gene 38774 38994 . - . locus_tag=CPT-T1_051;ID=CPT-T1_051.gene; +AY216660.2 GbkToGff mRNA 38774 38994 . - . locus_tag=CPT-T1_051;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_051.mRNA;Parent=CPT-T1_051.gene; +AY216660.2 GbkToGff CDS 38774 38983 . - 0 locus_tag=CPT-T1_051;codon_start=1;transl_table=11;product=hypothetical protein;translation=MEQDNFWTRYFAALDAGLSSEWCIKVAYKEITLDEALGDMDMDAESEYDPNFELPGDDINEDVDDYIPW;note=Orf no. 6 see PMID: 14972552;ID=CPT-T1_051.CDS.1;Parent=CPT-T1_051.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 38991 38994 . - . locus_tag=CPT-T1_051;regulatory_class=ribosome_binding_site;ID=CPT-T1_051.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_051.mRNA; +AY216660.2 GbkToGff gene 38987 39222 . - . locus_tag=CPT-T1_052;ID=CPT-T1_052.gene; +AY216660.2 GbkToGff mRNA 38987 39222 . - . locus_tag=CPT-T1_052;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_052.mRNA;Parent=CPT-T1_052.gene; +AY216660.2 GbkToGff CDS 38987 39211 . - 0 locus_tag=CPT-T1_052;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSIKVENIIKHLNAKGRVFIKMDKSSGFISMTVTKTRNGNSVIGSVPGSRLINATDADVRATLEANSIYINSWG;note=Orf no. 5 see PMID: 14972552;ID=CPT-T1_052.CDS.1;Parent=CPT-T1_052.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 39219 39222 . - . locus_tag=CPT-T1_052;regulatory_class=ribosome_binding_site;ID=CPT-T1_052.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_052.mRNA; +AY216660.2 GbkToGff gene 39289 39444 . - . locus_tag=CPT-T1_053;ID=CPT-T1_053.gene; +AY216660.2 GbkToGff mRNA 39289 39444 . - . locus_tag=CPT-T1_053;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_053.mRNA;Parent=CPT-T1_053.gene; +AY216660.2 GbkToGff CDS 39289 39432 . - 0 locus_tag=CPT-T1_053;codon_start=1;transl_table=11;product=hypothetical protein;translation=MIYVHTFYTGKFNSVKNVRVYDSRQKAMMQKVVLGGTIKECKVISEC;note=Orf no. 4 see PMID: 14972552;ID=CPT-T1_053.CDS.1;Parent=CPT-T1_053.mRNA; +AY216660.2 GbkToGff gene 39429 39758 . - . locus_tag=CPT-T1_054;ID=CPT-T1_054.gene; +AY216660.2 GbkToGff mRNA 39429 39758 . - . locus_tag=CPT-T1_054;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_054.mRNA;Parent=CPT-T1_054.gene; +AY216660.2 GbkToGff CDS 39429 39749 . - 0 locus_tag=CPT-T1_054;codon_start=1;transl_table=11;product=hypothetical protein;translation=MNHTYKITTKSPKINGSTVAALNNAAAIHEKNIMERVKAAVGRFYGINADIADSKRLFKYAPGHPYSRMVDIKHNKELVRIGSLSVDEFDHSINLVTAYQTWDGKK;note=Orf no. 3 see PMID: 14972552;ID=CPT-T1_054.CDS.1;Parent=CPT-T1_054.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 39755 39758 . - . locus_tag=CPT-T1_054;regulatory_class=ribosome_binding_site;ID=CPT-T1_054.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_054.mRNA; +AY216660.2 GbkToGff gene 39766 39978 . - . locus_tag=CPT-T1_055;ID=CPT-T1_055.gene; +AY216660.2 GbkToGff mRNA 39766 39978 . - . locus_tag=CPT-T1_055;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_055.mRNA;Parent=CPT-T1_055.gene; +AY216660.2 GbkToGff CDS 39766 39966 . - 0 locus_tag=CPT-T1_055;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSDNIYRVVAISRKTQKRVIAYMGSSAIEATDAFELLKNNEGFMNTFRVRLERLEPVIIDEARKLS;note=Orf no. 2 see PMID: 14972552;ID=CPT-T1_055.CDS.1;Parent=CPT-T1_055.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 39973 39978 . - . locus_tag=CPT-T1_055;regulatory_class=ribosome_binding_site;ID=CPT-T1_055.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_055.mRNA; +AY216660.2 GbkToGff gene 39959 40342 . - . locus_tag=CPT-T1_056;ID=CPT-T1_056.gene; +AY216660.2 GbkToGff mRNA 39959 40342 . - . locus_tag=CPT-T1_056;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_056.mRNA;Parent=CPT-T1_056.gene; +AY216660.2 GbkToGff CDS 39959 40330 . - 0 locus_tag=CPT-T1_056;codon_start=1;transl_table=11;product=hypothetical protein;translation=MFKQFTDLDFSASSVIQTDEKVHVAIENIARKIHNKQEKAMIAALTAYYDVSDVMECVDRVTRVVDRLGASRLIDNDTGEVITQFNKPFMRTEPGSVAPCFVADYSITVNSFVADRVKEALYE;note=Orf no. 1 see PMID: 14972552;ID=CPT-T1_056.CDS.1;Parent=CPT-T1_056.mRNA; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 40339 40342 . - . locus_tag=CPT-T1_056;regulatory_class=ribosome_binding_site;ID=CPT-T1_056.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_056.mRNA; +AY216660.2 GbkToGff gene 41020 41606 . + . locus_tag=CPT-T1_057;ID=CPT-T1_057.gene; +AY216660.2 GbkToGff mRNA 41020 41606 . + . locus_tag=CPT-T1_057;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_057.mRNA;Parent=CPT-T1_057.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 41020 41024 . + . locus_tag=CPT-T1_057;regulatory_class=ribosome_binding_site;ID=CPT-T1_057.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_057.mRNA; +AY216660.2 GbkToGff CDS 41031 41606 . + 0 locus_tag=CPT-T1_057;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSSYQSDAVQAAIKAAYEKAGVTVEQRPEAKVTDVIRAACDQLYGDGENTEFTFDANKMAEAAARKSMPDADEHDVAKGAESWLLGKTDEINEKFKSSFITPIVSRHFSKIGKSVKVSVTMNDEKLRVVTISVSDEEVPVKKRRSRKKVSLADCLDSFVPDVDDLEKGDVTVSTVRDLVRQMKAHIEKCGL;note=Orf no. 77 see PMID: 14972552;ID=CPT-T1_057.CDS.1;Parent=CPT-T1_057.mRNA; +AY216660.2 GbkToGff gene 41606 41945 . + . locus_tag=CPT-T1_058;ID=CPT-T1_058.gene; +AY216660.2 GbkToGff mRNA 41606 41945 . + . locus_tag=CPT-T1_058;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_058.mRNA;Parent=CPT-T1_058.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 41606 41610 . + . locus_tag=CPT-T1_058;regulatory_class=ribosome_binding_site;ID=CPT-T1_058.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_058.mRNA; +AY216660.2 GbkToGff CDS 41619 41945 . + 0 locus_tag=CPT-T1_058;codon_start=1;transl_table=11;product=hypothetical protein;translation=MFNIKPLTEAEKQAQAKQTENIQVIADALIGKRSIKINLDTVGQSFFTKGLDKYVINVKARDLVARIQKLNNQKLKLIKVEGNMCEIENLSAPDPNKWEITDVEFIVE;note=Orf no. 76 see PMID: 14972552;ID=CPT-T1_058.CDS.1;Parent=CPT-T1_058.mRNA; +AY216660.2 GbkToGff gene 42013 42254 . + . locus_tag=CPT-T1_059;ID=CPT-T1_059.gene; +AY216660.2 GbkToGff mRNA 42013 42254 . + . locus_tag=CPT-T1_059;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_059.mRNA;Parent=CPT-T1_059.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 42013 42016 . + . locus_tag=CPT-T1_059;regulatory_class=ribosome_binding_site;ID=CPT-T1_059.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_059.mRNA; +AY216660.2 GbkToGff CDS 42024 42254 . + 0 locus_tag=CPT-T1_059;codon_start=1;transl_table=11;product=hypothetical protein;translation=MSIVKNQQAIDSTNNNRFAIFITRDNKRFAVKAVPGGYKTYMEDNGKWVRCDNLANFLVWNADLQGFDDISTLIEE;note=Orf no. 75 see PMID: 14972552;ID=CPT-T1_059.CDS.1;Parent=CPT-T1_059.mRNA; +AY216660.2 GbkToGff gene 42247 42487 . + . locus_tag=CPT-T1_060;ID=CPT-T1_060.gene; +AY216660.2 GbkToGff mRNA 42247 42487 . + . locus_tag=CPT-T1_060;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_060.mRNA;Parent=CPT-T1_060.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 42247 42251 . + . locus_tag=CPT-T1_060;regulatory_class=ribosome_binding_site;ID=CPT-T1_060.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_060.mRNA; +AY216660.2 GbkToGff CDS 42260 42487 . + 0 locus_tag=CPT-T1_060;codon_start=1;transl_table=11;product=hypothetical protein;translation=MPRYSNLTQLTRVNGHMIPAKSTHYAMGAKHGLYFKWRGQWNFTVIRNFYIRVTGDDPQSVVENSIGDNKIEVLK;note=Orf no. 74 see PMID: 14972552;ID=CPT-T1_060.CDS.1;Parent=CPT-T1_060.mRNA; +AY216660.2 GbkToGff gene 42473 42594 . + . locus_tag=CPT-T1_061;ID=CPT-T1_061.gene; +AY216660.2 GbkToGff mRNA 42473 42594 . + . locus_tag=CPT-T1_061;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_061.mRNA;Parent=CPT-T1_061.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 42473 42477 . + . locus_tag=CPT-T1_061;regulatory_class=ribosome_binding_site;ID=CPT-T1_061.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_061.mRNA; +AY216660.2 GbkToGff CDS 42484 42594 . + 0 locus_tag=CPT-T1_061;codon_start=1;transl_table=11;product=hypothetical protein;translation=MNFNIIAFWSAVWFFCVGHVVVGIVIMLLLCAGAFE;note=single transmembrane domain predicted N-in and C-out%3BOrf no. 73 see PMID: 14972552;ID=CPT-T1_061.CDS.1;Parent=CPT-T1_061.mRNA; +AY216660.2 GbkToGff gene 42580 42764 . + . locus_tag=CPT-T1_062;ID=CPT-T1_062.gene; +AY216660.2 GbkToGff mRNA 42580 42764 . + . locus_tag=CPT-T1_062;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_062.mRNA;Parent=CPT-T1_062.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 42580 42583 . + . locus_tag=CPT-T1_062;regulatory_class=ribosome_binding_site;ID=CPT-T1_062.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_062.mRNA; +AY216660.2 GbkToGff CDS 42591 42764 . + 0 locus_tag=CPT-T1_062;codon_start=1;transl_table=11;product=hypothetical protein;translation=MMRILICMMAAVAMAILVVSGCGEARDSCHETGSQVTTFVMVGNVLLPITSNEITCE;note=Orf no. 72 see PMID: 14972552;ID=CPT-T1_062.CDS.1;Parent=CPT-T1_062.mRNA; +AY216660.2 GbkToGff gene 42824 43324 . + . locus_tag=CPT-T1_063;ID=CPT-T1_063.gene; +AY216660.2 GbkToGff mRNA 42824 43324 . + . locus_tag=CPT-T1_063;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_063.mRNA;Parent=CPT-T1_063.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 42824 42827 . + . locus_tag=CPT-T1_063;regulatory_class=ribosome_binding_site;ID=CPT-T1_063.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_063.mRNA; +AY216660.2 GbkToGff CDS 42836 43324 . + 0 locus_tag=CPT-T1_063;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKIKLLSNGGYKGFTRDLEADPIVVDAVKCDSSTGGYRVKVDDLVKAGVYDLDYGLSVSPVFGPADFNEKDGTMFFFDWEVKANIKPRKVRLLSNGGYPMRPGYENRTFPVIVDFIGTTDNLVYVSHEQLKAVGFVGGMNKEALCFFHRCPEPIGIECELVY;note=Orf no. 71 see PMID: 14972552;ID=CPT-T1_063.CDS.1;Parent=CPT-T1_063.mRNA; +AY216660.2 GbkToGff gene 43385 43881 . + . locus_tag=CPT-T1_064;ID=CPT-T1_064.gene; +AY216660.2 GbkToGff mRNA 43385 43881 . + . locus_tag=CPT-T1_064;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_064.mRNA;Parent=CPT-T1_064.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 43385 43388 . + . locus_tag=CPT-T1_064;regulatory_class=ribosome_binding_site;ID=CPT-T1_064.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_064.mRNA; +AY216660.2 GbkToGff CDS 43396 43881 . + 0 locus_tag=CPT-T1_064;codon_start=1;transl_table=11;product=hypothetical protein;translation=MLKLKDIQFPVVFNTISCGKITCHSKDRATDSSFNECHPSIVGNLIELHNNHNPDNIPSLPYYVEGVGPGWKVGRSIFHAAKPEIKPALQCTQIENMPLSATLKGVQLDSESWIEITATPKTIEVHDDVVILLLHYGSFKHKTVSGEISIKRGTLVRYEVK;note=Orf no. 70 see PMID: 14972552;ID=CPT-T1_064.CDS.1;Parent=CPT-T1_064.mRNA; +AY216660.2 GbkToGff gene 43870 44030 . + . locus_tag=CPT-T1_065;ID=CPT-T1_065.gene; +AY216660.2 GbkToGff mRNA 43870 44030 . + . locus_tag=CPT-T1_065;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_065.mRNA;Parent=CPT-T1_065.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 43870 43874 . + . locus_tag=CPT-T1_065;regulatory_class=ribosome_binding_site;ID=CPT-T1_065.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_065.mRNA; +AY216660.2 GbkToGff CDS 43881 44030 . + 0 locus_tag=CPT-T1_065;codon_start=1;transl_table=11;product=hypothetical protein;translation=MTAWVLIILMSKGPDHVYMESQQSCNKAREVIAENKPFGYEVKTMCVKR;note=Orf no. 69 see PMID: 14972552;ID=CPT-T1_065.CDS.1;Parent=CPT-T1_065.mRNA; +AY216660.2 GbkToGff gene 44098 44485 . + . locus_tag=CPT-T1_066;ID=CPT-T1_066.gene; +AY216660.2 GbkToGff mRNA 44098 44485 . + . locus_tag=CPT-T1_066;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_066.mRNA;Parent=CPT-T1_066.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 44098 44103 . + . locus_tag=CPT-T1_066;regulatory_class=ribosome_binding_site;ID=CPT-T1_066.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_066.mRNA; +AY216660.2 GbkToGff CDS 44111 44485 . + 0 locus_tag=CPT-T1_066;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKFECISDNTKKFTVGKIYDVPTEHAEQTVALTDDTGRNRIATVTHNGEGLRWNSGGTKFATFGKKRKRTFRVNGNVAANKIHNVKPSEVDRKPALKFKEKVDLFNLAASLVLLVAAISLLSIM;note=single transmembrane domain predicted N-in and C-out%3B Orf no. 68 see PMID: 14972552;ID=CPT-T1_066.CDS.1;Parent=CPT-T1_066.mRNA; +AY216660.2 GbkToGff regulatory 44493 44526 . + . regulatory_class=terminator%2C rho-independent;ID=AY216660.2.regulatory.16; +AY216660.2 GbkToGff gene 44527 44649 . + . locus_tag=CPT-T1_067;ID=CPT-T1_067.gene; +AY216660.2 GbkToGff mRNA 44527 44649 . + . locus_tag=CPT-T1_067;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_067.mRNA;Parent=CPT-T1_067.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 44527 44530 . + . locus_tag=CPT-T1_067;regulatory_class=ribosome_binding_site;ID=CPT-T1_067.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_067.mRNA; +AY216660.2 GbkToGff CDS 44539 44649 . + 0 locus_tag=CPT-T1_067;codon_start=1;transl_table=11;product=hypothetical protein;translation=MPDFSNWNNEPPSFQELLFCLLVLTLSLKGVLWLLS;note=single transmembrane domain predicted N-out and C-in%3B Orf no. 67 see PMID: 14972552;ID=CPT-T1_067.CDS.1;Parent=CPT-T1_067.mRNA; +AY216660.2 GbkToGff gene 44625 44852 . + . locus_tag=CPT-T1_068;ID=CPT-T1_068.gene; +AY216660.2 GbkToGff mRNA 44625 44852 . + . locus_tag=CPT-T1_068;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_068.mRNA;Parent=CPT-T1_068.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 44625 44628 . + . locus_tag=CPT-T1_068;regulatory_class=ribosome_binding_site;ID=CPT-T1_068.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_068.mRNA; +AY216660.2 GbkToGff CDS 44634 44852 . + 0 locus_tag=CPT-T1_068;codon_start=1;transl_table=11;product=hypothetical protein;translation=MATIMTVEDAARDAVEGMRPNTSRIAHYYKSEVSAVQLVHEILRLPQVDSARVVTCLKNYFCITIKTNSTNC;note=Orf no. 66 see PMID: 14972552;ID=CPT-T1_068.CDS.1;Parent=CPT-T1_068.mRNA; +AY216660.2 GbkToGff gene 44898 45356 . + . locus_tag=CPT-T1_069;ID=CPT-T1_069.gene; +AY216660.2 GbkToGff mRNA 44898 45356 . + . locus_tag=CPT-T1_069;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_069.mRNA;Parent=CPT-T1_069.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 44898 44901 . + . locus_tag=CPT-T1_069;regulatory_class=ribosome_binding_site;ID=CPT-T1_069.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_069.mRNA; +AY216660.2 GbkToGff CDS 44910 45356 . + 0 locus_tag=CPT-T1_069;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKHLICIEAPNDQYTLHGLGVFKGHYITAGTYDARRGDGDLMITSKEVNPYIMQNLGNNEYMAYGCNAVYKHVKIRKRVVRAFKKIAIKYWKMSKKDAGRWARNVADSYFYRNGESCYFLIDELMENYGGDFSQGSFDDWANYEISCW;note=Orf no. 65 see PMID: 14972552;ID=CPT-T1_069.CDS.1;Parent=CPT-T1_069.mRNA; +AY216660.2 GbkToGff gene 45428 45970 . + . locus_tag=CPT-T1_070;ID=CPT-T1_070.gene; +AY216660.2 GbkToGff mRNA 45428 45970 . + . locus_tag=CPT-T1_070;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_070.mRNA;Parent=CPT-T1_070.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 45428 45431 . + . locus_tag=CPT-T1_070;regulatory_class=ribosome_binding_site;ID=CPT-T1_070.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_070.mRNA; +AY216660.2 GbkToGff CDS 45440 45970 . + 0 locus_tag=CPT-T1_070;note=HHPred 99 probability structural alignment to phage T4 polynucleotide kinase Protein Data bank entry 5UJ0 over most of protein%3B Orf no. 64 see PMID: 14972552%3B InterPro domain IPR023214;codon_start=1;transl_table=11;product=polynucleotide kinase PnkP;translation=MDKITIWGQTINLFLGTRRVAIFDFDGTLSDGSGRLHLLPTKDLHLTESWSEFNRAAIFDNPIQSTIDVMNSMFAAGYHVIILTGRSDEVRYASELWLKHHGARYDYLVMRPHTDNRKDTVMKEEAVRAIGIDNILAAWDDSVNIIKKFRDLGITTYQVCEYACDSREDLNSHGVD;ID=CPT-T1_070.CDS.1;Parent=CPT-T1_070.mRNA; +AY216660.2 GbkToGff gene 45941 46451 . + . locus_tag=CPT-T1_071;ID=CPT-T1_071.gene; +AY216660.2 GbkToGff mRNA 45941 46451 . + . locus_tag=CPT-T1_071;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_071.mRNA;Parent=CPT-T1_071.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 45941 45944 . + . locus_tag=CPT-T1_071;regulatory_class=ribosome_binding_site;ID=CPT-T1_071.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_071.mRNA; +AY216660.2 GbkToGff CDS 45957 46451 . + 0 locus_tag=CPT-T1_071;note=InterPro domains IPR001471%2C IPR003615%2C and IPR016177%3B similar to phage T7 protein 3.8%3B alternative in-frame start site proposed as T1 p63a%3B Orf no. 63 see PMID: 14972552;codon_start=1;transl_table=11;product=HNH endonuclease;translation=MVSIDNKSMVRELFTYSDGVLYWKAKSSKYSRAKIGGAAGSKDKDGYIIIRVRNETRGAHRLVWIYHNGKIPDGMEVDHMDGDITNNRIENLRLVTRTINNRNQKKRSDNTTGVSGVTFMKDRGKYRAQVRNKRLGQFDTIEEAAKAVKDERDRLGLFTKRHGV;ID=CPT-T1_071.CDS.1;Parent=CPT-T1_071.mRNA; +AY216660.2 GbkToGff gene 46444 47026 . + . locus_tag=CPT-T1_072;ID=CPT-T1_072.gene; +AY216660.2 GbkToGff mRNA 46444 47026 . + . locus_tag=CPT-T1_072;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_072.mRNA;Parent=CPT-T1_072.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 46444 46447 . + . locus_tag=CPT-T1_072;regulatory_class=ribosome_binding_site;ID=CPT-T1_072.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_072.mRNA; +AY216660.2 GbkToGff CDS 46454 47026 . + 0 locus_tag=CPT-T1_072;note=InterPro domain IPR027417%3B HHPred predicted structural similarity at 99%25 probability to phage T4 DNK Protein Data Bank Entry 1DEK%3B Orf no. 62 see PMID: 14972552;codon_start=1;transl_table=11;product=deoxynucleotide kinase;translation=MKTAIILNGAPGAGKDTIGCILADTYDHVALRSFKAPMFEIARAILGETNFEYFMFLYEDRRYKEEPASILNGKSPRQFMIWISEEVIKPQFGNRFFGMRAESKVKESHSLSVFTDGGFKDEILQMIEGDIQVKLCRIHRNGCNFDNDSRDYIYLDDMIGVNGYQECDFFSVEGHPEITAQHIAATFINK;ID=CPT-T1_072.CDS.1;Parent=CPT-T1_072.mRNA; +AY216660.2 GbkToGff gene 47085 47308 . + . locus_tag=CPT-T1_073;ID=CPT-T1_073.gene; +AY216660.2 GbkToGff mRNA 47085 47308 . + . locus_tag=CPT-T1_073;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_073.mRNA;Parent=CPT-T1_073.gene; +AY216660.2 GbkToGff CDS 47099 47308 . + 0 locus_tag=CPT-T1_073;codon_start=1;transl_table=11;product=hypothetical protein;translation=MMVSTDKFFTCTKTSEVFELVHTDNGDFMHDGCDAFIEVKESDYDDGVYYNPAVNTQFFTPIEEEGEEA;note=Orf no. 61 see PMID: 14972552;ID=CPT-T1_073.CDS.1;Parent=CPT-T1_073.mRNA; +AY216660.2 GbkToGff gene 47293 47649 . + . locus_tag=CPT-T1_074;ID=CPT-T1_074.gene; +AY216660.2 GbkToGff mRNA 47293 47649 . + . locus_tag=CPT-T1_074;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_074.mRNA;Parent=CPT-T1_074.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 47293 47297 . + . locus_tag=CPT-T1_074;regulatory_class=ribosome_binding_site;ID=CPT-T1_074.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_074.mRNA; +AY216660.2 GbkToGff CDS 47305 47649 . + 0 locus_tag=CPT-T1_074;codon_start=1;transl_table=11;product=hypothetical protein;translation=MITINLSDKQAREILDTIGEQLHVKGDTAEILNQIERQLTPVSTNQAEFAAWKSERILPNIIKAWKRKHKKEINVEDLFTDELSPSNVAQYQLRYMESVCNQVLGVSFSFKGDK;note=Orf no. 60 see PMID: 14972552;ID=CPT-T1_074.CDS.1;Parent=CPT-T1_074.mRNA; +AY216660.2 GbkToGff gene 47637 47879 . + . locus_tag=CPT-T1_075;ID=CPT-T1_075.gene; +AY216660.2 GbkToGff mRNA 47637 47879 . + . locus_tag=CPT-T1_075;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_075.mRNA;Parent=CPT-T1_075.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 47637 47640 . + . locus_tag=CPT-T1_075;regulatory_class=ribosome_binding_site;ID=CPT-T1_075.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_075.mRNA; +AY216660.2 GbkToGff CDS 47649 47879 . + 0 locus_tag=CPT-T1_075;codon_start=1;transl_table=11;product=hypothetical protein;translation=MFGLSEAEWNVVKRAAKELNKFVSGMKKEDRKNDKIMIDVISTHHKKVELLIDRYKFVWTAGYIAGRVGNKEGDYE;note=Orf no. 59 see PMID: 14972552;ID=CPT-T1_075.CDS.1;Parent=CPT-T1_075.mRNA; +AY216660.2 GbkToGff gene 47864 48082 . + . locus_tag=CPT-T1_076;ID=CPT-T1_076.gene; +AY216660.2 GbkToGff mRNA 47864 48082 . + . locus_tag=CPT-T1_076;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_076.mRNA;Parent=CPT-T1_076.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 47864 47868 . + . locus_tag=CPT-T1_076;regulatory_class=ribosome_binding_site;ID=CPT-T1_076.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_076.mRNA; +AY216660.2 GbkToGff CDS 47879 48082 . + 0 locus_tag=CPT-T1_076;codon_start=1;transl_table=11;product=hypothetical protein;translation=MANLPKKGDQVRCVTSRNGNALSAGCLYDVEKVSKSKRLVFVYGDDGNLHEIDYPQDVTNGQFEIND;note=Orf no. 58 see PMID: 14972552;ID=CPT-T1_076.CDS.1;Parent=CPT-T1_076.mRNA; +AY216660.2 GbkToGff gene 48235 48408 . + . locus_tag=CPT-T1_077;ID=CPT-T1_077.gene; +AY216660.2 GbkToGff mRNA 48235 48408 . + . locus_tag=CPT-T1_077;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_077.mRNA;Parent=CPT-T1_077.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 48235 48238 . + . locus_tag=CPT-T1_077;regulatory_class=ribosome_binding_site;ID=CPT-T1_077.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_077.mRNA; +AY216660.2 GbkToGff CDS 48247 48408 . + 0 locus_tag=CPT-T1_077;codon_start=1;transl_table=11;product=hypothetical protein;translation=MQKTKDESVKIEIKVTRNGETTRYKKRLNPGEAVIGRIAGVMIKAQEDEAIQS;note=Orf no. 57 see PMID: 14972552;ID=CPT-T1_077.CDS.1;Parent=CPT-T1_077.mRNA; +AY216660.2 GbkToGff gene 48377 48574 . + . locus_tag=CPT-T1_078;ID=CPT-T1_078.gene; +AY216660.2 GbkToGff mRNA 48377 48574 . + . locus_tag=CPT-T1_078;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_078.mRNA;Parent=CPT-T1_078.gene; +AY216660.2 GbkToGff CDS 48389 48574 . + 0 locus_tag=CPT-T1_078;codon_start=1;transl_table=11;product=hypothetical protein;translation=MKRFKVKLIIRKMGMFCQSCKQSFEAELSATSQDEAITKAKKLSGANLDTHKINIELIKEI;note=alternative start codon to Orf no. 56 see PMID: 14972552;ID=CPT-T1_078.CDS.1;Parent=CPT-T1_078.mRNA; +AY216660.2 GbkToGff gene 48564 48803 . + . locus_tag=CPT-T1_079;ID=CPT-T1_079.gene; +AY216660.2 GbkToGff mRNA 48564 48803 . + . locus_tag=CPT-T1_079;Notes=mRNA feature automatically generated by Gbk to GFF conversion;ID=CPT-T1_079.mRNA;Parent=CPT-T1_079.gene; +AY216660.2 GbkToGff Shine_Dalgarno_seqeunce 48564 48568 . + . locus_tag=CPT-T1_079;regulatory_class=ribosome_binding_site;ID=CPT-T1_079.Shine_Dalgarno_seqeunce.1;Parent=CPT-T1_079.mRNA; +AY216660.2 GbkToGff CDS 48576 48803 . + 0 locus_tag=CPT-T1_079;codon_start=1;transl_table=11;product=hypothetical protein;translation=MTIFLLIIAGVIIFGAGLFAGFALVAAAIAMDAKDKTGVWLTYSPKKDQWEMTGDLAHCYSKAKTHPKGIKRRLS;note=single transmembrane domain predicted N-out and C-in%3B Orf no. 55 see PMID: 14972552;ID=CPT-T1_079.CDS.1;Parent=CPT-T1_079.mRNA;