Mercurial > repos > cpt > cpt_phageqc_annotations
view cpt_phageqc_annotation/test-data/PhageQC_Out.gff3 @ 0:c3140b08d703 draft default tip
Uploaded
| author | cpt |
|---|---|
| date | Fri, 17 Jun 2022 13:00:50 +0000 |
| parents | |
| children |
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##gff-version 3 AY216660.2 feature gene 25 34 . + . note=Missing RBS;ID=CPT-T1_001.gene;Name= AY216660.2 feature gene 574 583 . + . note=Missing RBS;ID=CPT-T1_002.gene;Name= AY216660.2 feature gene 2215 2224 . + . note=Missing RBS;ID=CPT-T1_003.gene;Name= AY216660.2 feature gene 3481 3490 . + . note=Missing RBS;ID=CPT-T1_004.gene;Name= AY216660.2 feature gene 4249 4258 . + . note=Missing RBS;ID=CPT-T1_005.gene;Name= AY216660.2 feature gene 5374 5383 . + . note=Missing RBS;ID=CPT-T1_006.gene;Name= AY216660.2 feature gene 5911 5920 . + . note=Missing RBS;ID=CPT-T1_007.gene;Name= AY216660.2 feature gene 6769 6778 . + . note=Missing RBS;ID=CPT-T1_008.gene;Name= AY216660.2 feature gene 7779 7788 . + . note=Missing RBS;ID=CPT-T1_009.gene;Name= AY216660.2 feature gene 8112 8121 . + . note=Missing RBS;ID=CPT-T1_010.gene;Name= AY216660.2 feature gene 8519 8528 . + . note=Missing RBS;ID=CPT-T1_011.gene;Name= AY216660.2 feature gene 8882 8891 . + . note=Missing RBS;ID=CPT-T1_012.gene;Name= AY216660.2 feature gene 9317 9326 . + . note=Missing RBS;ID=CPT-T1_013.gene;Name= AY216660.2 feature gene 9718 9727 . + . note=Missing RBS;ID=CPT-T1_014.gene;Name= AY216660.2 feature gene 10501 10510 . + . note=Missing RBS;ID=CPT-T1_015.gene;Name= AY216660.2 feature gene 10501 10510 . + . note=Missing RBS;ID=CPT-T1_016.gene;Name= AY216660.2 feature gene 11177 11186 . + . note=Missing RBS;ID=CPT-T1_017.gene;Name= AY216660.2 feature gene 14052 14061 . + . note=Missing RBS;ID=CPT-T1_018.gene;Name= AY216660.2 feature gene 14485 14494 . + . note=Missing RBS;ID=CPT-T1_019.gene;Name= AY216660.2 feature gene 15264 15273 . + . note=Missing RBS;ID=CPT-T1_020.gene;Name= AY216660.2 feature gene 15994 16003 . + . note=Missing RBS;ID=CPT-T1_021.gene;Name= AY216660.2 feature gene 16673 16682 . + . note=Missing RBS;ID=CPT-T1_022.gene;Name= AY216660.2 feature gene 20236 20245 . + . note=Missing RBS;ID=CPT-T1_023.gene;Name= AY216660.2 feature gene 20541 20550 . + . note=Missing RBS;ID=CPT-T1_024.gene;Name= AY216660.2 feature gene 21524 21533 . - . note=Missing RBS;ID=CPT-T1_025.gene;Name= AY216660.2 feature gene 21740 21749 . + . note=Missing RBS;ID=CPT-T1_026.gene;Name= AY216660.2 feature gene 22005 22014 . + . note=Missing RBS;ID=CPT-T1_027.gene;Name= AY216660.2 feature gene 23114 23123 . + . note=Missing RBS;ID=CPT-T1_028.gene;Name= AY216660.2 feature gene 23839 23848 . + . note=Missing RBS;ID=CPT-T1_029.gene;Name= AY216660.2 feature gene 26556 26565 . - . note=Missing RBS;ID=CPT-T1_030.gene;Name= AY216660.2 feature gene 26606 26615 . - . note=Missing RBS;ID=CPT-T1_031.gene;Name= AY216660.2 feature gene 27591 27600 . - . note=Missing RBS;ID=CPT-T1_032.gene;Name= AY216660.2 feature gene 28104 28113 . - . note=Missing RBS;ID=CPT-T1_033.gene;Name= AY216660.2 feature gene 28153 28162 . + . note=Missing RBS;ID=CPT-T1_034.gene;Name= AY216660.2 feature gene 30166 30175 . + . note=Missing RBS;ID=CPT-T1_035.gene;Name= AY216660.2 feature gene 30654 30663 . + . note=Missing RBS;ID=CPT-T1_036.gene;Name= AY216660.2 feature gene 31362 31371 . + . note=Missing RBS;ID=CPT-T1_037.gene;Name= AY216660.2 feature gene 31680 31689 . + . note=Missing RBS;ID=CPT-T1_038.gene;Name= AY216660.2 feature gene 31866 31875 . + . note=Missing RBS;ID=CPT-T1_039.gene;Name= AY216660.2 feature gene 32084 32093 . + . note=Missing RBS;ID=CPT-T1_040.gene;Name= AY216660.2 feature gene 32452 32461 . + . note=Missing RBS;ID=CPT-T1_041.gene;Name= AY216660.2 feature gene 33658 33667 . + . note=Missing RBS;ID=CPT-T1_042.gene;Name= AY216660.2 feature gene 34211 34220 . + . note=Missing RBS;ID=CPT-T1_043.gene;Name= AY216660.2 feature gene 34510 34519 . + . note=Missing RBS;ID=CPT-T1_044.gene;Name= AY216660.2 feature gene 34724 34733 . + . note=Missing RBS;ID=CPT-T1_045.gene;Name= AY216660.2 feature gene 35212 35221 . + . note=Missing RBS;ID=CPT-T1_046.gene;Name= AY216660.2 feature gene 36185 36194 . - . note=Missing RBS;ID=CPT-T1_047.gene;Name= AY216660.2 feature gene 37761 37770 . - . note=Missing RBS;ID=CPT-T1_048.gene;Name= AY216660.2 feature gene 38300 38309 . - . note=Missing RBS;ID=CPT-T1_049.gene;Name= AY216660.2 feature gene 38712 38721 . - . note=Missing RBS;ID=CPT-T1_050.gene;Name= AY216660.2 feature gene 39000 39009 . - . note=Missing RBS;ID=CPT-T1_051.gene;Name= AY216660.2 feature gene 39228 39237 . - . note=Missing RBS;ID=CPT-T1_052.gene;Name= AY216660.2 feature gene 39450 39459 . - . note=Missing RBS;ID=CPT-T1_053.gene;Name= AY216660.2 feature gene 39764 39773 . - . note=Missing RBS;ID=CPT-T1_054.gene;Name= AY216660.2 feature gene 39984 39993 . - . note=Missing RBS;ID=CPT-T1_055.gene;Name= AY216660.2 feature gene 40348 40357 . - . note=Missing RBS;ID=CPT-T1_056.gene;Name= AY216660.2 feature gene 41005 41014 . + . note=Missing RBS;ID=CPT-T1_057.gene;Name= AY216660.2 feature gene 41591 41600 . + . note=Missing RBS;ID=CPT-T1_058.gene;Name= AY216660.2 feature gene 41998 42007 . + . note=Missing RBS;ID=CPT-T1_059.gene;Name= AY216660.2 feature gene 42232 42241 . + . note=Missing RBS;ID=CPT-T1_060.gene;Name= AY216660.2 feature gene 42458 42467 . + . note=Missing RBS;ID=CPT-T1_061.gene;Name= AY216660.2 feature gene 42565 42574 . + . note=Missing RBS;ID=CPT-T1_062.gene;Name= AY216660.2 feature gene 42809 42818 . + . note=Missing RBS;ID=CPT-T1_063.gene;Name= AY216660.2 feature gene 43370 43379 . + . note=Missing RBS;ID=CPT-T1_064.gene;Name= AY216660.2 feature gene 43855 43864 . + . note=Missing RBS;ID=CPT-T1_065.gene;Name= AY216660.2 feature gene 44083 44092 . + . note=Missing RBS;ID=CPT-T1_066.gene;Name= AY216660.2 feature gene 44512 44521 . + . note=Missing RBS;ID=CPT-T1_067.gene;Name= AY216660.2 feature gene 44610 44619 . + . note=Missing RBS;ID=CPT-T1_068.gene;Name= AY216660.2 feature gene 44883 44892 . + . note=Missing RBS;ID=CPT-T1_069.gene;Name= AY216660.2 feature gene 45413 45422 . + . note=Missing RBS;ID=CPT-T1_070.gene;Name= AY216660.2 feature gene 45926 45935 . + . note=Missing RBS;ID=CPT-T1_071.gene;Name= AY216660.2 feature gene 46429 46438 . + . note=Missing RBS;ID=CPT-T1_072.gene;Name= AY216660.2 feature gene 47070 47079 . + . note=Missing RBS;ID=CPT-T1_073.gene;Name= AY216660.2 feature gene 47278 47287 . + . note=Missing RBS;ID=CPT-T1_074.gene;Name= AY216660.2 feature gene 47622 47631 . + . note=Missing RBS;ID=CPT-T1_075.gene;Name= AY216660.2 feature gene 47849 47858 . + . note=Missing RBS;ID=CPT-T1_076.gene;Name= AY216660.2 feature gene 48220 48229 . + . note=Missing RBS;ID=CPT-T1_077.gene;Name= AY216660.2 feature gene 48362 48371 . + . note=Missing RBS;ID=CPT-T1_078.gene;Name= AY216660.2 feature gene 48549 48558 . + . note=Missing RBS;ID=CPT-T1_079.gene;Name= AY216660.2 feature gene 2185 2238 . . . note=Excessive gap%2C 54 bases; AY216660.2 feature gene 5877 5937 . . . note=Excessive gap%2C 61 bases; AY216660.2 feature gene 6706 6795 . . . note=Excessive gap%2C 90 bases; AY216660.2 feature gene 10415 10527 . . . note=Excessive gap%2C 113 bases; AY216660.2 feature gene 14433 14511 . . . note=Excessive gap%2C 79 bases; AY216660.2 feature gene 14424 14540 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 14424 14433 . + . Parent=<unknown id>; AY216660.2 feature CDS 14439 14540 . + 0 Parent=<unknown id>; AY216660.2 feature gene 14447 14451 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 14452 14461 . - . Parent=<unknown id>; AY216660.2 feature CDS 14447 14524 . - 0 Parent=<unknown id>; AY216660.2 feature gene 16622 16698 . . . note=Excessive gap%2C 77 bases; AY216660.2 feature gene 21507 21765 . . . note=Excessive gap%2C 259 bases; AY216660.2 feature gene 21907 22033 . . . note=Excessive gap%2C 127 bases; AY216660.2 feature gene 24290 24350 . . . note=Excessive gap%2C 61 bases; AY216660.2 feature gene 24286 24390 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 24286 24295 . + . Parent=<unknown id>; AY216660.2 feature CDS 24301 24390 . + 0 Parent=<unknown id>; AY216660.2 feature gene 27574 27634 . . . note=Excessive gap%2C 61 bases; AY216660.2 feature gene 28088 28180 . . . note=Excessive gap%2C 93 bases; AY216660.2 feature gene 30613 30679 . . . note=Excessive gap%2C 67 bases; AY216660.2 feature gene 30629 30718 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 30629 30638 . + . Parent=<unknown id>; AY216660.2 feature CDS 30644 30718 . + 0 Parent=<unknown id>; AY216660.2 feature gene 31642 31707 . . . note=Excessive gap%2C 66 bases; AY216660.2 feature gene 32400 32477 . . . note=Excessive gap%2C 78 bases; AY216660.2 feature gene 32385 32492 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 32385 32394 . + . Parent=<unknown id>; AY216660.2 feature CDS 32400 32492 . + 0 Parent=<unknown id>; AY216660.2 feature gene 33612 33683 . . . note=Excessive gap%2C 72 bases; AY216660.2 feature gene 34167 34238 . . . note=Excessive gap%2C 72 bases; AY216660.2 feature gene 34416 34533 . . . note=Excessive gap%2C 118 bases; AY216660.2 feature gene 35639 35760 . . . note=Excessive gap%2C 122 bases; AY216660.2 feature gene 35674 35678 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 35679 35688 . - . Parent=<unknown id>; AY216660.2 feature CDS 35674 35754 . - 0 Parent=<unknown id>; AY216660.2 feature gene 35674 35678 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 35679 35688 . - . Parent=<unknown id>; AY216660.2 feature CDS 35674 35766 . - 0 Parent=<unknown id>; AY216660.2 feature gene 38694 38773 . . . note=Excessive gap%2C 80 bases; AY216660.2 feature gene 38719 38814 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 38719 38728 . + . Parent=<unknown id>; AY216660.2 feature CDS 38734 38814 . + 0 Parent=<unknown id>; AY216660.2 feature gene 38725 38814 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 38725 38734 . + . Parent=<unknown id>; AY216660.2 feature CDS 38740 38814 . + 0 Parent=<unknown id>; AY216660.2 feature gene 39212 39288 . . . note=Excessive gap%2C 77 bases; AY216660.2 feature gene 40331 41030 . . . note=Excessive gap%2C 700 bases; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40496 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40511 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40541 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40559 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40595 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40416 40420 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40421 40430 . - . Parent=<unknown id>; AY216660.2 feature CDS 40416 40637 . - 0 Parent=<unknown id>; AY216660.2 feature gene 40817 40921 . + . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 40817 40826 . + . Parent=<unknown id>; AY216660.2 feature CDS 40832 40921 . + 0 Parent=<unknown id>; AY216660.2 feature gene 41946 42023 . . . note=Excessive gap%2C 78 bases; AY216660.2 feature gene 42765 42835 . . . note=Excessive gap%2C 71 bases; AY216660.2 feature gene 43325 43395 . . . note=Excessive gap%2C 71 bases; AY216660.2 feature gene 44031 44110 . . . note=Excessive gap%2C 80 bases; AY216660.2 feature gene 44486 44538 . . . note=Excessive gap%2C 53 bases; AY216660.2 feature gene 44853 44909 . . . note=Excessive gap%2C 57 bases; AY216660.2 feature gene 45357 45439 . . . note=Excessive gap%2C 83 bases; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45445 . - 0 Parent=<unknown id>; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45463 . - 0 Parent=<unknown id>; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45466 . - 0 Parent=<unknown id>; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45475 . - 0 Parent=<unknown id>; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45478 . - 0 Parent=<unknown id>; AY216660.2 feature gene 45368 45372 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 45373 45382 . - . Parent=<unknown id>; AY216660.2 feature CDS 45368 45481 . - 0 Parent=<unknown id>; AY216660.2 feature gene 47027 47098 . . . note=Excessive gap%2C 72 bases; AY216660.2 feature gene 48083 48246 . . . note=Excessive gap%2C 164 bases; AY216660.2 feature gene 48086 48090 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 48091 48100 . - . Parent=<unknown id>; AY216660.2 feature CDS 48086 48169 . - 0 Parent=<unknown id>; AY216660.2 feature gene 48160 48164 . - . note=Possible gene; AY216660.2 feature Shine_Dalgarno_sequence 48165 48174 . - . Parent=<unknown id>; AY216660.2 feature CDS 48160 48255 . - 0 Parent=<unknown id>; AY216660.2 feature gene 10528 10844 . . . note=Excessive Overlap;ID=CPT-T1_015.gene;Name= AY216660.2 feature gene 26447 26536 . . . note=Excessive Overlap;ID=CPT-T1_030.gene;Name= AY216660.2 feature gene 32112 32166 . . . note=Excessive Overlap;ID=CPT-T1_039.gene;Name=