comparison protein_blast_grouping.py @ 4:258afe02e34a draft

planemo upload commit 1098c37fcd6cf35d77748a08aa8b3ee9093c5aea

3:c5e0e05ce58a

        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(f"# Top {num_hits} Hits", file=output_file)
        print(
            "{:>4} {:<20} {:>10} {:>10}".format(
                "Rank", "Phage Name", "Unique Query Matches", "Unique Subject Hits"
            ),
            file=output_file,
        )
        for rank, (organism, data) in enumerate(top_hits):
            print(
                "{:>4} {:<50} {:<25} {:<25}".format(
                    rank,
                    organism,
                    len(data["unique_queries"]),
                    len(data["unique_hits"]),
                ),
                file=output_file,
            )


def main():

4:258afe02e34a

        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(f"# Top {num_hits} Hits", file=output_file)
        print(
            "Rank\tPhage Name\tUnique Query Matches\tUnique Subject Hits",
            file=output_file,
        )
        for rank, (organism, data) in enumerate(top_hits):
            print(
                f"{rank}\t{organism}\t{len(data['unique_queries'])}\t{len(data['unique_hits'])}",
                file=output_file,
            )


def main():