comparison protein_blast_grouping.py @ 3:c5e0e05ce58a draft

planemo upload commit 120ca2f78836796630f3116ec95ad0326c6e6b6f

2:8e34cd137d3e

    def print_results(
        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(f"# Top {num_hits} Hits")
        print(
            "{:<50} {:<25} {:<25}".format(
                "# Name", "Unique Query Matches", "Unique Subject Hits"
            )
        )
        for organism, data in top_hits:
            print(
                "{:<50} {:<25} {:<25}".format(
                    organism, len(data["unique_queries"]), len(data["unique_hits"])
                ),
                file=output_file,
            )

3:c5e0e05ce58a

    def print_results(
        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(f"# Top {num_hits} Hits", file=output_file)
        print(
            "{:>4} {:<20} {:>10} {:>10}".format(
                "Rank", "Phage Name", "Unique Query Matches", "Unique Subject Hits"
            ),
            file=output_file,
        )
        for rank, (organism, data) in enumerate(top_hits):
            print(
                "{:>4} {:<50} {:<25} {:<25}".format(
                    rank,
                    organism,
                    len(data["unique_queries"]),
                    len(data["unique_hits"]),
                ),
                file=output_file,
            )