comparison protein_blast_grouping.py @ 5:11701cc63084 draft default tip

planemo upload commit 12a58961f0eb41803c1954ac8c2543ed7c56186f

4:258afe02e34a

    def print_results(
        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(f"# Top {num_hits} Hits", file=output_file)
        print(
            "Rank\tPhage Name\tUnique Query Matches\tUnique Subject Hits",
            file=output_file,
        )
        for rank, (organism, data) in enumerate(top_hits):
            print(
                f"{rank}\t{organism}\t{len(data['unique_queries'])}\t{len(data['unique_hits'])}",
                file=output_file,
            )

5:11701cc63084

    def print_results(
        self, num_hits, sort_key="unique_queries", output_file=sys.stdout
    ):
        top_hits = self.get_top_hits(num_hits, sort_key)
        print(
            "Rank\tPhage Name\tUnique Query Matches\tUnique Subject Hits",
            file=output_file,
        )
        for r, (organism, data) in enumerate(top_hits):
            rank = r + 1  # 1-based ranking
            print(
                f"{rank}\t{organism}\t{len(data['unique_queries'])}\t{len(data['unique_hits'])}",
                file=output_file,
            )