Mercurial > repos > cpt > cpt_psm_plotter
annotate lib/CPT/Plot/Gene.pm @ 1:8691c1c61a8e draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
| author | cpt | 
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| date | Mon, 05 Jun 2023 02:48:47 +0000 | 
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| rev | line source | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
cpt 
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1 package CPT::Plot::Gene; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
cpt 
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2 use Moose; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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3 use strict; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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4 use warnings; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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5 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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6 # ABSTRACT: Stupid representation of a gene. Does not handle joined genes | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
cpt 
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7 has 'start' => ( is => 'rw', isa => 'Int' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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8 has 'end' => ( is => 'rw', isa => 'Int' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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9 has 'tag' => ( is => 'rw', isa => 'Str' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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10 has 'label' => ( is => 'rw', isa => 'Str' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
cpt 
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11 has 'strand' => ( is => 'rw', isa => 'Str' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
cpt 
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12 has 'color' => ( is => 'rw', isa => 'Any' ); | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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13 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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14 sub getLocations { | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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15 my ($self) = @_; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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16 return [ $self->start(), $self->end() ]; | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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17 } | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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18 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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19 no Moose; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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20 1; | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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21 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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22 __END__ | 
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23 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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24 =pod | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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25 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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26 =encoding UTF-8 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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27 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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28 =head1 NAME | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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29 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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30 CPT::Plot::Gene - Stupid representation of a gene. Does not handle joined genes | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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31 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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32 =head1 VERSION | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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33 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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34 version 1.96 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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35 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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36 =head1 AUTHOR | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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37 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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38 Eric Rasche <rasche.eric@yandex.ru> | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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39 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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40 =head1 COPYRIGHT AND LICENSE | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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41 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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42 This software is Copyright (c) 2014 by Eric Rasche. | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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43 | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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44 This is free software, licensed under: | 
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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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45 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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46 The GNU General Public License, Version 3, June 2007 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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47 | 
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8691c1c61a8e
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
 
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48 =cut | 
