Mercurial > repos > cpt > cpt_putative_isp
comparison generate-putative-isp.xml @ 6:7a0ed74e9ff8 draft
planemo upload commit e563355aff813a6412160834ee3dead9414eddc8
| author | cpt |
|---|---|
| date | Wed, 18 Sep 2024 05:03:59 +0000 |
| parents | 0f6659efd912 |
| children | f0ca7edbe202 |
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| 5:0f6659efd912 | 6:7a0ed74e9ff8 |
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| 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> | 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> |
| 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> | 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"> | 6 <requirements> |
| 7 <requirement type="package" version="3.9">python</requirement> | |
| 7 <requirement type="package" version="2019.06.08">regex</requirement> | 8 <requirement type="package" version="2019.06.08">regex</requirement> |
| 8 <requirement type="package" version="1.77">biopython</requirement> | 9 <requirement type="package" version="1.77">biopython</requirement> |
| 9 </expand> | 10 <requirement type="package" version="1.2.2">cpt_gffparser</requirement> |
| 11 </requirements> | |
| 10 <command detect_errors="aggressive"><![CDATA[ | 12 <command detect_errors="aggressive"><![CDATA[ |
| 11 python '$__tool_directory__/generate-putative-isp.py' | 13 python '$__tool_directory__/generate-putative-isp.py' |
| 12 '$fasta_file' | 14 '$fasta_file' |
| 13 --strand '$strand' | 15 --strand '$strand' |
| 14 --switch '$switch' | 16 --switch '$switch' |