Mercurial > repos > cpt > cpt_putative_isp
comparison generate-putative-isp.xml @ 9:9fa911974de6 draft default tip
planemo upload commit a4912b5d710e0082b764a8c90bf184078e74d83d-dirty
| author | cpt |
|---|---|
| date | Fri, 20 Sep 2024 03:38:42 +0000 |
| parents | b5c1b167df3c |
| children |
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| 8:b5c1b167df3c | 9:9fa911974de6 |
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| 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> | 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> |
| 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> | 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"> | 6 <requirements> |
| 7 <requirement type="package" version="3.9">python</requirement> | |
| 8 <requirement type="package" version="1.84">biopython</requirement> | |
| 7 <requirement type="package" version="2024.9.11">regex</requirement> | 9 <requirement type="package" version="2024.9.11">regex</requirement> |
| 8 </expand> | 10 </requirements> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 11 <command detect_errors="aggressive"><![CDATA[ |
| 10 python '$__tool_directory__/generate-putative-isp.py' | 12 python '$__tool_directory__/generate-putative-isp.py' |
| 11 '$fasta_file' | 13 '$fasta_file' |
| 12 --strand '$strand' | 14 --strand '$strand' |
| 13 --switch '$switch' | 15 --switch '$switch' |