# HG changeset patch
# User cpt
# Date 1726804960 0
# Node ID 8f6c09b6a43d51c8dab3f105beeafb71238b19ca
# Parent  859e18a9814a152e59972e4fd7b5b51c1f3a176b
planemo upload commit 471832a126aa25d903becae9a074a6b7b1ff7092-dirty

diff -r 859e18a9814a -r 8f6c09b6a43d cpt.py
--- a/cpt.py	Fri Sep 20 03:52:11 2024 +0000
+++ b/cpt.py	Fri Sep 20 04:02:40 2024 +0000
@@ -4,6 +4,7 @@
 from Bio import SeqIO
 from Bio.Data import CodonTable
 import logging
+import regex as re
 
 logging.basicConfig()
 log = logging.getLogger()
@@ -147,7 +148,7 @@
             if index % 3 != 0:
                 continue
             n = s[start:index]
-            for (offset, n, t) in self.start_chop_and_trans(n):
+            for offset, n, t in self.start_chop_and_trans(n):
                 if n and len(t) >= self.min_len:
                     yield start + offset, n, t
             start = index
@@ -294,7 +295,7 @@
             if index % 3 != 0:
                 continue
             n = s[start:index]
-            for (offset, n, t) in self.start_chop_and_trans(n):
+            for offset, n, t in self.start_chop_and_trans(n):
                 if n and len(t) >= self.min_len:
                     yield start + offset, n, t
             start = index