diff reading_garnier_output.xml @ 1:edd518e72c89 draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/reading_garnier_output.xml	Mon Jun 05 02:52:09 2023 +0000
@@ -0,0 +1,27 @@
+<tool id="edu.tamu.cpt2.phage.read_garnier" name="Read Garnier Secondary Structure Prediction" version="1.0">
+  <description>read garnier tool output</description>
+  <macros>
+    <import>macros.xml</import>
+    <import>cpt-macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python '$__tool_directory__/reading_garnier_output.py'
+'$tagseq_file'
+
+
+>'$output']]></command>
+  <inputs>
+    <param label="Tagseq" name="tagseq_file" type="data" format="tagseq"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output"/>
+  </outputs>
+  <help><![CDATA[
+**What it does**
+This program takes output from the garnier tool (as a tagseq file) and converts it into structural predictions for each 
+sequence analyzed by the garnier tool. 
+
+        ]]></help>
+  <expand macro="citations"/>
+</tool>