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view test-data/candidate_SAR_stats.tsv @ 2:373c8bca8a82 draft default tip

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planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author cpt
date Fri, 05 Jan 2024 05:57:09 +0000
parents 112751823323
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Name	Protein Sequence	Protein Length	SAR Length	SAR Start	Putative SAR Sequence	SAR End	['S%', 'G%', 'A%', 'T%']	% Total	N-term Sequence	N-term net Charge
SAR-endolysin	MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ	171	17	9	KAALLAVTIAGGGVGGY	26	[('S', 0.0), ('G', 29.41), ('A', 23.53), ('T', 5.88)]	58.82	MAGIPKKL	2
SAR-endolysin	MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ	171	16	10	AALLAVTIAGGGVGGY	26	[('S', 0.0), ('G', 31.25), ('A', 25.0), ('T', 6.25)]	62.5	MAGIPKKLK	3
SAR-endolysin	MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ	171	15	9	KAALLAVTIAGGGVG	24	[('S', 0.0), ('G', 26.67), ('A', 26.67), ('T', 6.67)]	60.01	MAGIPKKL	2
SAR-endolysin	MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ	171	15	10	AALLAVTIAGGGVGG	25	[('S', 0.0), ('G', 33.33), ('A', 26.67), ('T', 6.67)]	66.67	MAGIPKKLK	3
SAR-endolysin	MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ	171	15	11	ALLAVTIAGGGVGGY	26	[('S', 0.0), ('G', 33.33), ('A', 20.0), ('T', 6.67)]	60.0	MAGIPKKLKA	3