annotate data/lysis-family-v1.0.3.json @ 2:21ae0e340d80 draft default tip

planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc

{
    "endolysins": [
        "serine protease inhibitor complex",
        "lysin",
        "peptidoglycan stem peptide endopeptidase",
        "serpin complex",
        "peptidoglycan endopeptidase",
        "mucopeptide N-acetylmuramoylhydrolase",
        "peptidoglycan muralytic",
        "omega-amidase",
        "protein-N-terminal glutamine amidohydrolase",
        "glycosylase",
        "threonine endopeptidase",
        "w-amidase",
        "serine-type endopeptidase inhibitor complex",
        "beta-1,4-poly-N-acetyl glucosamidinase",
        "muralytic",
        "omega-amidodicarboxylate amidohydrolase",
        "endopeptidase activator",
        "lysozyme inhibitor",
        "threonine-type endopeptidase",
        "hydrolase",
        "endopeptidase regulator",
        "endopeptidase",
        "penicillin amidohydrolase",
        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
        "1,4-N-acetylmuramidase",
        "benzylpenicillin acylase",
        "aspartic-type endopeptidase inhibitor",
        "endolysin",
        "acylamide amidohydrolase",
        "cytolysis",
        "prevention of cysteine-type endopeptidase",
        "carboxypeptidase",
        "alpha-keto acid-omega-amidase",
        "fatty acylamidase",
        "acylamidase",
        "calcium-dependent cysteine-type endopeptidase",
        "lysozyme",
        "activation of cysteine-type endopeptidase",
        "serine-type endopeptidase",
        "small conjugating protein-specific endopeptidase",
        "amidohydrolase",
        "peptidoglycan N-acetylmuramoylhydrolase",
        "acetamidase",
        "ubiquitin-like protein-specific endopeptidase",
        "chitodextrinase",
        "aspartic-type endopeptidase",
        "palmitoleoyl [acyl-carrier protein]-dependent acyltransferase",
        "muramidase",
        "endopeptidase complex",
        "N-acetylaminohydrolase",
        "endopeptidase inhibitor",
        "semacylase",
        "penicillin acylase",
        "PNGase",
        "penicillin amidase",
        "acylase",
        "NtQ-amidase",
        "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase",
        "alpha-acylamino-beta-lactam acylhydrolase",
        "serine-type endopeptidase inhibitor",
        "poly-beta-glucosaminidase",
        "glycosidase",
        "mucopeptide glucohydrolase",
        "serine-type endopeptidase complex",
        "cysteine-type endopeptidase inhibitor",
        "amidase",
        "peptidoglycan cross-bridge peptide endopeptidase",
        "cysteine-type endopeptidase",
        "1,4-beta-poly-N-acetylglucosaminidase",
        "chitinase",
        "muraminidase",
        "ampicillin acylase",
        "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase",
        "thiol endopeptidase",
        "aspartic endopeptidase",
        "N,O-diacetylmuramidase"
    ],
    "holins": [
        "canonical holin",
        "holin",
        "antiholin",
        "cytolysis",
        "pinholin",
        "anti-holin",
        "anti-holins",
        "co-holin",
        "co-holins"
    ],
    "endolysin_domains": [
        "2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase",
        "aspartylglycosylamine amidohydrolase",
        "4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
        "endo-beta-N-acetylglucosaminidase L",
        "exo-beta-D-glucosaminidase",
        "alpha-N-acetylglucosaminidase",
        "sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase",
        "peptidoglycan lytic transglycosylase",
        "N-acetylhexosaminidase",
        "endo-beta-N-acetylglucosaminidase H",
        "viral exit from host cell by cytolysis",
        "glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
        "N-acetyl-beta-glucosaminidase",
        "beta-aspartylglucosylamine amidohydrolase",
        "N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
        "endo-N-acetyl-beta-glucosaminidase",
        "alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase",
        "alpha-acetylglucosaminidase",
        "alpha-D-2-acetamido-2-deoxyglucosidase",
        "soluble lytic transglycosylase",
        "4-alpha-glucanotransferase",
        "beta-acetylhexosaminidinase",
        "non-lytic viral release",
        "viral release by cell lysis",
        "Peptidase_M15_3",
        "beta-hexosaminidase",
        "Peptidase_M15_4",
        "DUF3597",
        "YkuD",
        "endo-beta-(1->4)-N-acetylglucosaminidase",
        "Peptidase_M23",
        "beta-1,4-poly-N-acetyl glucosamidinase",
        "peptidoglycan glycosyltransferase",
        "lysis of host organelle involved in viral entry into host cell",
        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
        "aspartylglucosylaminidase",
        "transferase",
        "beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase",
        "N-acetyl-alpha-D-glucosaminidase",
        "Peptidase_U40",
        "sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase",
        "endo-N-acetyl-beta-D-glucosaminidase",
        "viral release from host cell by cytolysis",
        "endoglycosidase S",
        "beta-D-hexosaminidase",
        "undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase",
        "transglycosidase",
        "mannosyl-glycoprotein endo-beta-N-acetylglucosamidase",
        "mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase",
        "chitosan glucosaminohydrolase",
        "aspartylglucosaminidase",
        "oligo-1,4-1,4-glucantransferase",
        "peptidoglycan transglycosylase",
        "endo-beta-N-acetylglucosaminidase",
        "Amidase_5",
        "Glyco_hydro_19",
        "amylomaltase",
        "lytic transglycosylase",
        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase",
        "beta-acetylaminodeoxyhexosidase",
        "peptidoglycan TGase",
        "dextrin transglycosylase",
        "amylo-(1,4 to 1,6)transglucosidase",
        "alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase",
        "aspartylglucosylamine deaspartylase",
        "exochitosanase",
        "Glyco_hydro_25",
        "glycosyltransferase",
        "N-acetyl-beta-D-hexosaminidase",
        "chitosan exo-1,4-beta-D-glucosaminidase",
        "mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase",
        "lytic endotransglycosylase",
        "NLPC_P60",
        "beta-N-acetyl-D-hexosaminidase",
        "lytic viral release",
        "VanY",
        "N-acetyl-beta-hexosaminidase",
        "N-aspartyl-beta-glucosaminidase",
        "amylo-(1,4->1,6)-transglycosylase",
        "beta-D-N-acetylhexosaminidase",
        "exo-1,4-beta-D-glucosaminidase",
        "glucosan transglycosylase",
        "aspartylglucosylaminase",
        "Glyco_hydro_108",
        "amylose isomerase",
        "N-acetyl-alpha-glucosaminidase",
        "Glucosaminidase",
        "N4-(beta-N-acetylglucosaminyl)-L-asparaginase",
        "Amidase_2",
        "alpha-glucan-branching glycosyltransferase",
        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase",
        "glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
        "endoglycosidase H",
        "debranching enzyme maltodextrin glycosyltransferase",
        "Transglycosylase",
        "bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase",
        "Amidase02_C",
        "Chitinase",
        "1,4-alpha-glucan branching enzyme",
        "glucosyl-N-acetylglucosamine glucosaminidase",
        "glycosylasparaginase",
        "beta-N-acetylhexosaminidase",
        "PG-II",
        "di-N-acetylchitobiosyl beta-N-acetylglucosaminidase",
        "1,4-glucan-6-(1,4-glucano)-transferase",
        "sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase",
        "chitodextrinase",
        "glycogen branching enzyme",
        "endo-beta-N-acetylglucosaminidase D",
        "NlpD",
        "Peptidase_C39_2",
        "endo-beta-acetylglucosaminidase",
        "branching glycosyltransferase",
        "viral release by host cell lysis",
        "N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase",
        "poly-beta-glucosaminidase",
        "transglycosylase",
        "viral penetration via lysis of host organellar membrane",
        "NAG",
        "1,4-beta-poly-N-acetylglucosaminidase",
        "chitinase",
        "endo-beta-N-acetylglucosaminidase F",
        "Amidase_3",
        "VANY",
        "PET-C39-2",
        "TRANG",
        "PET-15-4",
        "AMI-5",
        "PET-U40",
        "NLPC-P60",
        "PET-M23",
        "YKUD",
        "GH25",
        "GH19",
        "CHAP",
        "PET-15-3",
        "GLUCO",
        "GH108",
        "NLPD",
        "AMI-2",
        "SLT",
        "AMI-3",
        "AMIO2-C",
        "GyH",
        "SLAP",
        "FOG",
        "PG_binding_1",
        "SH3b",
        "PG_binding_3",
        "SH3-related",
        "ChW",
        "SH3_3",
        "SH3_5",
        "Cpl-7",
        "LGFP",
        "SPOR",
        "LysM",
        "CPL7",
        "SH3-3",
        "SLAP",
        "FOG",
        "SH3b",
        "SH3-r",
        "CHW",
        "PG-3",
        "PG-1",
        "LGFP",
        "LYSM",
        "SPOR",
        "SH3-5",
        "cell wall amidase",
        "CWA",
        "N-acetylmuramoyl-L-alanine amidase of type 2",
        "NALAA-2",
        "IPR002502",
        "PF01510",
        "SM00644",
        "SSF55846",
        "G3DSA:3.40.80.10",
        "CD06583",
        "SLT1",
        "soluble lytic murein transglycosylase of type 1",
        "IPR010618",
        "TG",
        "IPR010618 (transglycosylase)",
        "PGB1",
        "peptidoglycan binding domain type 1",
        "IPR002477",
        "sporulation-related",
        "IPR007730",
        "sarcoma [src] homology 3 of type 3",
        "PF08329 (SH3-3)",
        "sarcoma [src] homology 3 of type 5",
        "PF08460 (SH3-5)",
        "sarcoma [src] homology 3 of type 8",
        "SH3-8",
        "PF13457",
        "S-layer protien",
        "IPR024968",
        "lysin motif",
        "IPR018392",
        "CW7",
        "cell wall binding domain of Cpl-7",
        "IPR013168",
        "SLH",
        "S-layer homology domain",
        "IPR001119",
        "CWB1",
        "cell wall binding repeat of type 1",
        "IPR018337",
        "CWB2",
        "cell wall binding repeat of type 2",
        "IPR007253",
        "clostridial hydrophobic repeat with a conserved W residue",
        "IPR006637",
        "N-acetylmuramoyl-L-alanine amidase of type 3",
        "NALAA-3",
        "IPR002508",
        "PF01520",
        "SM00646",
        "G3DSA:3.40.630.40",
        "CD2696",
        "AMIN",
        "N-terminal nonamidase",
        "IPR021731",
        "SH3-4",
        "sarcoma [src] homology 3 of type 4",
        "PF06347",
        "N-acetylmuramoyl-L-alanine amidase of type 5",
        "NALAA-5",
        "IPR008044",
        "PF05382",
        "cell wall glycosidases",
        "CWG",
        "glycoside hydrolase family 3",
        "GHF-3",
        "IPR002772",
        "IPR001764",
        "PF01915",
        "SSF52279",
        "G3DSA:3.40.50.1700",
        "PF00933",
        "PR00133",
        "G3DSA:3.20.20.300",
        "CWBD1",
        "LPXTG",
        "glycoside hydrolase family 73",
        "GHF-73",
        "IPR002901",
        "PF01832",
        "SM00047",
        "MltG",
        "membrane-bound lytic transglycosylase of type G",
        "IPR003770",
        "CWBD2",
        "glycoside hydrolase family 22",
        "GHF-22",
        "IPR001916",
        "PF00062",
        "glycoside hydrolase family 24",
        "GHF-24",
        "IPR002196",
        "2ANV",
        "2ANX",
        "glycoside hydrolase family 25",
        "GHF-25",
        "IPR002053",
        "PF01183",
        "cell wall peptidase",
        "CWP",
        "cysteine histidine-dependent amidohydrolases/peptidase",
        "IPR007921",
        "PF05257",
        "PS50911",
        "SleB",
        "Spore cortex-lytic enzyme of Bacilus",
        "IPR011105",
        "SLT2",
        "soluble lytic murein transglycosylase of type 2",
        "IPR031304",
        "N lipoprotein C/protein of 60-kDa",
        "NlpC/P60",
        "IPR000064",
        "PF0877",
        "G3DSA:3.90.1720.10",
        "PGB2",
        "peptidoglycan binding domain of type 2",
        "IPR014927",
        "SH3-1",
        "sarcoma [src] homology 3 of type 1",
        "PF00018",
        "SH3-2",
        "sarcoma [src] homology 3 of type 2",
        "PF07653",
        "SH3-6",
        "sarcoma [src] homology 3 of type 6",
        "PF12913",
        "SH3-7",
        "sarcoma [src] homology 3 of type 7",
        "PF12914",
        "Peptidase M14",
        "PM14",
        "IPR000834",
        "PF00246",
        "PS00132",
        "PR00765",
        "SM00631",
        "Peptidase M15",
        "PM15",
        "IPR000755",
        "PF01427",
        "MF01924",
        "PIRSF026671",
        "PGB3",
        "peptidoglycan binding domain of type 3",
        "IPR018537",
        "Peptidase M23",
        "PM23",
        "IPR016047",
        "PF01551",
        "RlpA",
        "rare lipoprotein A",
        "IPR034718",
        "SH3-9",
        "sarcoma [src] homology 3 of type 9",
        "PF14604",
        "Peptidase M74",
        "PM74",
        "IPR005073",
        "PF03411",
        "MF01623",
        "PIRSF018455",
        "Peptidase S11",
        "PS11",
        "IPR001967",
        "PF00768",
        "Peptidase S13",
        "PS13",
        "IPR000667",
        "PF02113",
        "TIGR00666",
        "PR0922",
        "Peptidase S66",
        "PS66",
        "IPR003507",
        "PF02016",
        "PIRSF028757",
        "Transpeptidase",
        "TP",
        "IPR0005490",
        "PF03734",
        "PGB4",
        "peptidoglycan binding domain of type 4",
        "IPR022029"
    ],
    "spanin_domains": [
        "IPR020000",
        "Bacteriophage P2, LysB",
        "IPR020130",
        "Spanin, outer lipoprotein subunit, T7likevirus",
        "IPR016417",
        "Spanin, inner membrane subunit, T7likevirus-type",
        "TIGR03495",
        "phage lysis regulatory protein, LysB family",
        "IPR004929",
        "Spanin, inner membrane subunit",
        "IPR010346",
        "Spanin, outer membrane subunit",
        "PF17531",
        "outer-membrane spanin sub-unit",
        "MF_04137",
        "PF06085",
        "Lipoprotein Rz1 precursor",
        "DUF2570",
        "PF10828",
        "IPR022538",
        "DUF2514",
        "PF10721",
        "IPR019659",
        "DUF2681",
        "PF10883",
        "IPR020274"
    ],
    "holin_domains": [
        "IPR006479",
        "PF07332",
        "Putative Actinobacterial Holin-X, holin superfamily III",
        "IPR007953",
        "Holin-like, BlyB",
        "IPR006485",
        "Bacteriophage holin",
        "IPR020109",
        "Holin, r1t-type",
        "IPR009937",
        "IPR007633",
        "Bacteriophage P2, GpY, holin",
        "IPR032111",
        "Clostridium phage holin",
        "IPR020982",
        "Bacteriophage T4, GpT, holin",
        "IPR006480",
        "Bacteriophage holin family",
        "IPR006493",
        "Holin, BlyA",
        "IPR009708",
        "Bacteriophage A118-like, holin/antiholin",
        "IPR032124",
        "Bacteriophage F116-like holin",
        "IPR032127",
        "LydA-holin antagonist LydB",
        "IPR032118",
        "Bacteriophage holin HP1 family",
        "PF04531",
        "PF04688",
        "SPP1 phage holin",
        "PF04971",
        "Bacteriophage P21 holin S",
        "IPR032126",
        "LydA-like holin",
        "PF16079",
        "Phage holin family Hol44, in holin superfamily V",
        "PF16084",
        "LydA-holin antagonist",
        "PF04550",
        "Phage holin family 2",
        "PF06946",
        "Bacteriophage A118-like holin, Hol118",
        "PF05105",
        "PF16080",
        "Bacteriophage holin family HP1",
        "TIGR01598",
        "holin, phage phi LC3 family",
        "PF05102",
        "holin, BlyA family",
        "IPR021497",
        "Holin of 3TMs, for gene-transfer release",
        "IPR023760",
        "Holin-like protein CidA",
        "PF16083",
        "LydA holin phage, holin superfamily III",
        "PF10960",
        "BhlA holin family",
        "TIGR01606",
        "holin, BlyA family",
        "PF11031",
        "Bacteriophage T holin",
        "PF16082",
        "Bacteriophage holin family, superfamily II-like",
        "TIGR01673",
        "phage holin, LL-H family",
        "PF11351",
        "IPR007054",
        "Lysis protein S",
        "IPR007165",
        "Mycobacterial 4 TMS phage holin, superfamily IV",
        "PF09682",
        "Bacteriophage holin of superfamily 6 (Holin_LLH)",
        "IPR031614",
        "Putative holin",
        "PF05449",
        "Putative 3TM holin, Phage_holin_3",
        "IPR019715",
        "Haemolysin XhlA",
        "IPR005538",
        "LrgA/CidA family",
        "IPR034696",
        "Antiholin T4 type",
        "IPR008473",
        "Putative 3TM holin, Phage holin 3",
        "MF_04104",
        "MF_04108",
        "PF04020",
        "IPR031612",
        "Putative phage holin",
        "IPR032128",
        "Pyocin R2, holin",
        "IPR032121",
        "Mycobacterial phage holin",
        "Antiholin-like protein LrgA",
        "IPR024891",
        "Antiholin-like protein LrgB",
        "IPR019682",
        "Bacteriophage T7, Gp17.5, holin",
        "IPR032637",
        "Putative phage holin-like",
        "IPR006481",
        "Bacteriophage lambda, GpS, holin",
        "PF05289",
        "Borrelia hemolysin accessory protein",
        "IPR007300",
        "CidB/LrgB family",
        "PF16936",
        "IPR010026",
        "Phage holin, LL-H family",
        "IPR025140",
        "Putative 2/3 transmembrane domain holin",
        "IPR031616",
        "Putative Holin-like Toxin (Hol-Tox)",
        "PF10746",
        "Phage holin T7 family, holin superfamily II",
        "PF16931",
        "TIGR01592",
        "holin, SPP1 family",
        "TIGR01594",
        "phage holin, lambda family",
        "PF16938",
        "Putative phage holin Dp-1",
        "TIGR01593",
        "toxin secretion/phage lysis holin",
        "MF_01143",
        "Holin-like protein CidA [cidA]",
        "PF16085",
        "Bacteriophage holin Hol, superfamily III",
        "PF05106",
        "Phage holin family (Lysis protein S)",
        "PF13272",
        "PF16935",
        "PF16945",
        "Putative lactococcus lactis phage r1t holin",
        "PF17368",
        "Spore morphogenesis and germination YwcE",
        "PF16081",
        "Mycobacterial 2 TMS Phage Holin (M2 Hol) Family"
    ],
    "spanins": [
        "isp",
        "osp",
        "usp",
        "ISP",
        "OSP",
        "USP",
        "EOS",
        "OOS",
        "SOS",
        "SIS",
        "OIS",
        "EIS",
        "embedded",
        "overlapping",
        "separated",
        "unimolecular",
        "spanin",
        "Rz",
        "outer membrane spanin",
        "inner membrane spanin"
    ]
}