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diff data/attic/lysis-family-expanded.json @ 1:6e3a843b6304 draft

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:53:18 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data/attic/lysis-family-expanded.json	Mon Jun 05 02:53:18 2023 +0000
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+{
+	"endolysins": [
+		"lysozyme inhibitor",
+		"mucopeptide N-acetylmuramoylhydrolase",
+		"muramidase",
+		"peptidoglycan N-acetylmuramoylhydrolase",
+		"lysozyme",
+		"mucopeptide glucohydrolase",
+		"N,O-diacetylmuramidase",
+		"1,4-N-acetylmuramidase",
+		"cytolysis",
+		"penicillin amidohydrolase",
+		"fatty acylamidase",
+		"ampicillin acylase",
+		"alpha-keto acid-omega-amidase",
+		"w-amidase",
+		"acylamidase",
+		"semacylase",
+		"penicillin amidase",
+		"palmitoleoyl [acyl-carrier protein]-dependent acyltransferase",
+		"amidohydrolase",
+		"omega-amidase",
+		"omega-amidodicarboxylate amidohydrolase",
+		"alpha-acylamino-beta-lactam acylhydrolase",
+		"acylamide amidohydrolase",
+		"acylase",
+		"acetamidase",
+		"protein-N-terminal glutamine amidohydrolase",
+		"penicillin acylase",
+		"N-acetylaminohydrolase",
+		"benzylpenicillin acylase",
+		"NtQ-amidase",
+		"amidase",
+		"mucopeptide N-acetylmuramoylhydrolase",
+		"muramidase",
+		"peptidoglycan N-acetylmuramoylhydrolase",
+		"lysozyme",
+		"mucopeptide glucohydrolase",
+		"N,O-diacetylmuramidase",
+		"1,4-N-acetylmuramidase",
+		"N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase",
+		"peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase",
+		"PNGase",
+		"glycosidase",
+		"hydrolase",
+		"aspartic-type endopeptidase inhibitor",
+		"peptidoglycan stem peptide endopeptidase",
+		"aspartic endopeptidase",
+		"serine-type endopeptidase",
+		"cysteine-type endopeptidase inhibitor",
+		"ubiquitin-like protein-specific endopeptidase",
+		"threonine-type endopeptidase",
+		"peptidoglycan endopeptidase",
+		"serpin complex",
+		"prevention of cysteine-type endopeptidase",
+		"activation of cysteine-type endopeptidase",
+		"peptidoglycan cross-bridge peptide endopeptidase",
+		"cysteine-type endopeptidase",
+		"endopeptidase regulator",
+		"endopeptidase",
+		"serine-type endopeptidase complex",
+		"endopeptidase complex",
+		"endopeptidase inhibitor",
+		"serine-type endopeptidase inhibitor complex",
+		"calcium-dependent cysteine-type endopeptidase",
+		"threonine endopeptidase",
+		"serine protease inhibitor complex",
+		"small conjugating protein-specific endopeptidase",
+		"endopeptidase activator",
+		"thiol endopeptidase",
+		"aspartic-type endopeptidase",
+		"serine-type endopeptidase inhibitor",
+		"peptidoglycan muralytic",
+		"glycosidase",
+		"hydrolase",
+		"poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
+		"beta-1,4-poly-N-acetyl glucosamidinase",
+		"1,4-beta-poly-N-acetylglucosaminidase",
+		"chitinase",
+		"chitodextrinase",
+		"poly-beta-glucosaminidase",
+		"lysozyme",
+		"endolysin",
+		"lysin",
+		"amidase",
+		"muramidase",
+		"muraminidase",
+		"glycosidase",
+		"endopeptidase",
+		"carboxypeptidase",
+		"muralytic",
+		"glycosylase",
+		"chitinase"
+	],
+	"holins": [
+		"canonical holin",
+		"cytolysis",
+		"antiholin",
+		"holin",
+		"antiholin",
+		"holin",
+		"pinholin",
+		"holin",
+		"antiholin",
+		"pinholin",
+		"lysis (protein)"
+	],
+	"ECDs": [
+		"poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
+		"beta-1,4-poly-N-acetyl glucosamidinase",
+		"1,4-beta-poly-N-acetylglucosaminidase",
+		"chitinase",
+		"chitodextrinase",
+		"poly-beta-glucosaminidase",
+		"lytic endotransglycosylase",
+		"glycosyltransferase",
+		"glycogen branching enzyme",
+		"glucosan transglycosylase",
+		"lytic viral release",
+		"sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase",
+		"viral life cycle",
+		"peptidoglycan TGase",
+		"4-alpha-glucanotransferase",
+		"oligo-1,4-1,4-glucantransferase",
+		"viral exit from host cell by cytolysis",
+		"PG-II",
+		"1,4-alpha-glucan branching enzyme",
+		"1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase",
+		"1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase",
+		"alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase",
+		"dextrin transglycosylase",
+		"lytic transglycosylase",
+		"viral penetration via lysis of host organellar membrane",
+		"peptidoglycan glycosyltransferase",
+		"bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase",
+		"peptidoglycan lytic transglycosylase",
+		"transglycosylase",
+		"alpha-glucan-branching glycosyltransferase",
+		"branching glycosyltransferase",
+		"debranching enzyme maltodextrin glycosyltransferase",
+		"amylo-(1,4 to 1,6)transglucosidase",
+		"transferase",
+		"sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase",
+		"1,4-glucan-6-(1,4-glucano)-transferase",
+		"non-lytic viral release",
+		"viral release by cell lysis",
+		"sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase",
+		"amylomaltase",
+		"lysis of host organelle involved in viral entry into host cell",
+		"undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase",
+		"amylose isomerase",
+		"amylo-(1,4->1,6)-transglycosylase",
+		"peptidoglycan transglycosylase",
+		"viral release by host cell lysis",
+		"transglycosidase",
+		"viral release from host cell by cytolysis",
+		"glycosyltransferase",
+		"glycogen branching enzyme",
+		"glucosan transglycosylase",
+		"peptidoglycan TGase",
+		"4-alpha-glucanotransferase",
+		"1,4-alpha-glucan branching enzyme",
+		"oligo-1,4-1,4-glucantransferase",
+		"PG-II",
+		"1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase",
+		"1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase",
+		"alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase",
+		"dextrin transglycosylase",
+		"lytic transglycosylase",
+		"peptidoglycan glycosyltransferase",
+		"bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase",
+		"peptidoglycan lytic transglycosylase",
+		"transglycosylase",
+		"alpha-glucan-branching glycosyltransferase",
+		"branching glycosyltransferase",
+		"debranching enzyme maltodextrin glycosyltransferase",
+		"amylo-(1,4 to 1,6)transglucosidase",
+		"transferase",
+		"1,4-glucan-6-(1,4-glucano)-transferase",
+		"undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase",
+		"amylo-(1,4->1,6)-transglycosylase",
+		"amylomaltase",
+		"amylose isomerase",
+		"peptidoglycan transglycosylase",
+		"transglycosidase",
+		"endo-beta-N-acetylglucosaminidase L",
+		"1,4-beta-poly-N-acetylglucosaminidase",
+		"glucosyl-N-acetylglucosamine glucosaminidase",
+		"N-acetylhexosaminidase",
+		"N-aspartyl-beta-glucosaminidase",
+		"N-acetyl-beta-hexosaminidase",
+		"mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase",
+		"endoglycosidase S",
+		"2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase",
+		"beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase",
+		"endo-beta-(1->4)-N-acetylglucosaminidase",
+		"alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase",
+		"endo-N-acetyl-beta-glucosaminidase",
+		"N-acetyl-beta-D-hexosaminidase",
+		"aspartylglucosaminidase",
+		"beta-D-N-acetylhexosaminidase",
+		"chitosan glucosaminohydrolase",
+		"beta-N-acetyl-D-hexosaminidase",
+		"alpha-acetylglucosaminidase",
+		"beta-hexosaminidase",
+		"chitosan exo-1,4-beta-D-glucosaminidase",
+		"glycosylasparaginase",
+		"4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
+		"N-acetyl-beta-glucosaminidase",
+		"beta-acetylaminodeoxyhexosidase",
+		"endo-beta-N-acetylglucosaminidase",
+		"poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
+		"N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase",
+		"di-N-acetylchitobiosyl beta-N-acetylglucosaminidase",
+		"alpha-D-2-acetamido-2-deoxyglucosidase",
+		"N-acetyl-alpha-glucosaminidase",
+		"chitinase",
+		"aspartylglucosylaminidase",
+		"mannosyl-glycoprotein endo-beta-N-acetylglucosamidase",
+		"beta-N-acetylhexosaminidase",
+		"endoglycosidase H",
+		"N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
+		"N-acetyl-alpha-D-glucosaminidase",
+		"endo-beta-N-acetylglucosaminidase D",
+		"aspartylglycosylamine amidohydrolase",
+		"endo-beta-N-acetylglucosaminidase F",
+		"endo-beta-acetylglucosaminidase",
+		"endo-beta-N-acetylglucosaminidase H",
+		"chitodextrinase",
+		"glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
+		"aspartylglucosylamine deaspartylase",
+		"exo-beta-D-glucosaminidase",
+		"exo-1,4-beta-D-glucosaminidase",
+		"NAG",
+		"aspartylglucosylaminase",
+		"beta-1,4-poly-N-acetyl glucosamidinase",
+		"N4-(beta-N-acetylglucosaminyl)-L-asparaginase",
+		"mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase",
+		"glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
+		"beta-acetylhexosaminidinase",
+		"beta-D-hexosaminidase",
+		"endo-N-acetyl-beta-D-glucosaminidase",
+		"exochitosanase",
+		"alpha-N-acetylglucosaminidase",
+		"beta-aspartylglucosylamine amidohydrolase",
+		"poly-beta-glucosaminidase",
+		"Glyco_hydro_19",
+		"Glyco_hydro_25",
+		"Glyco_hydro_108",
+		"Chitinase",
+		"soluble lytic transglycosylase",
+		"Transglycosylase",
+		"Glucosaminidase",
+		"Amidase02_C",
+		"Amidase_5",
+		"Amidase_3",
+		"Amidase_2",
+		"NlpD",
+		"VanY",
+		"Peptidase_U40",
+		"Peptidase_M15_3",
+		"Peptidase_M15_4",
+		"Peptidase_M23",
+		"YkuD",
+		"NLPC_P60",
+		"Peptidase_C39_2",
+		"CHAP",
+		"DUF3597"
+	],
+	"ECDs_accro": [
+		"GH19",
+		"GH25",
+		"GH108",
+		"GyH",
+		"SLT",
+		"TRANG",
+		"GLUCO",
+		"AMIO2-C",
+		"AMI-5",
+		"AMI-3",
+		"AMI-2",
+		"NLPD",
+		"VANY",
+		"PET-U40",
+		"PET-15-3",
+		"PET-15-4",
+		"PET-M23",
+		"YKUD",
+		"NLPC-P60",
+		"PET-C39-2",
+		"CHAP",
+		"DUF"
+	],
+	"CBDs": [
+		"PG_binding_3",
+		"LysM",
+		"SH3_3",
+		"SH3_5",
+		"PG_binding_1",
+		"ChW",
+		"ChW",
+		"Cpl-7",
+		"LGFP",
+		"SH3-related",
+		"FOG",
+		"SH3b",
+		"SPOR",
+		"SLAP"
+	],
+	"CBDs_accro": [
+		"PG-3",
+		"LYSM",
+		"SH3-3",
+		"SH3-5",
+		"PG-1",
+		"CHW",
+		"CHW",
+		"CPL7",
+		"LGFP",
+		"SH3-r",
+		"FOG",
+		"SH3b",
+		"SPOR",
+		"SLAP"
+	]
+}
\ No newline at end of file