Mercurial > repos > cpt > cpt_wig_bigwig
comparison cpt_wig_bigwig/fasta_len.py @ 0:4939ae73e79b draft
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author | cpt |
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date | Fri, 13 May 2022 05:42:27 +0000 |
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-1:000000000000 | 0:4939ae73e79b |
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1 #!/usr/bin/env python | |
2 import argparse | |
3 from Bio import SeqIO | |
4 import sys | |
5 | |
6 | |
7 if __name__ == "__main__": | |
8 parser = argparse.ArgumentParser() | |
9 parser.add_argument("fasta", type=argparse.FileType("r")) | |
10 args = parser.parse_args() | |
11 | |
12 for record in SeqIO.parse(args.fasta, "fasta"): | |
13 sys.stdout.write("%s\t%s\n" % (record.id, len(record))) |