Mercurial > repos > crs4 > blat

diff tool_dependencies.xml @ 0:0a71a7d35d09 draft

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author crs4
date Wed, 16 Oct 2013 13:54:38 -0400
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children c4ad58c4bc7d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 16 13:54:38 2013 -0400
@@ -0,0 +1,15 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="blat" version="35">
+<!--    <repository name="package_blat_35x1" owner="iuc" /> This may be used instead of everything inside <install> when a stable Galaxy release will support the 'download_binary' action type -->
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action>
+        <action type="shell_command">export MACHTYPE=`uname -m` &amp;&amp; export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/$MACHTYPE &amp;&amp; make</action>
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>