Mercurial > repos > crs4 > blat
diff readme.rst @ 4:5e43533e3ed9 draft
Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
author | crs4 |
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date | Mon, 25 Nov 2013 04:59:52 -0500 |
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children | 34e40c872149 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Mon Nov 25 04:59:52 2013 -0500 @@ -0,0 +1,24 @@ +BLAT wrapper +============ + +Install +------- + +This BLAT wrapper let you install `BLAT`_ tool dependency automatically. In order to do this, you need to: + +- have Galaxy release_2013.11.04 or later; +- respect BLAT licensing: BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the `Kent Informatics website`_. + +.. _BLAT: http://genome.ucsc.edu/FAQ/FAQblat.html +.. _Kent Informatics website: http://www.kentinformatics.com/ + +Version history +--------------- + +- Release 1 (blat_wrapper 0.2): Initial release in the Tool Shed. +- Release 2 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml . +- Release 3 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source. +- Release 4 (blat_wrapper 0.3): Depend on `package_blat_35x1`_ instead of compiling BLAT (requires Galaxy release_2013.11.04 or later). + +.. _Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat +.. _package_blat_35x1: http://toolshed.g2.bx.psu.edu/view/iuc/package_blat_35x1