Mercurial > repos > crs4 > bwa_mem
diff readme.rst @ 1:ebb02ba5987c draft default tip
Rewrite of param handling. interPairEnd param moved to "paired" section. Add param for '-a' option. Remove basic parallelism tag, which does not work with multiple inputs (thanks Bjoern Gruening for the notice). Simplify Python code.
| author | crs4 |
|---|---|
| date | Fri, 21 Mar 2014 12:56:15 -0400 |
| parents | 6820983ba5d5 |
| children |
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--- a/readme.rst Tue Mar 18 07:49:22 2014 -0400 +++ b/readme.rst Fri Mar 21 12:56:15 2014 -0400 @@ -25,9 +25,10 @@ Version history --------------- -- Release 0: Initial release in the Tool Shed. This is a fork of http://toolshed.g2.bx.psu.edu/view/yufei-luo/bwa_0_7_5 repository with the following changes: Remove .loc file, only .loc.sample should be included. Fix bwa_index.loc.sample file to contain only comments. Add suppressHeader param as in bwa_wrappers. Use $GALAXY_SLOTS environment variable when available. Add <version_command> and <help>. Remove unused import. Fix spacing and typos. Use new recommended citation. Add tool_dependencies.xml . Rename to bwa_mem. Remove definitively colorspace support. Use optparse instead of argparse since Galaxy still supports Python 2.6 . +- Release 1 (bwa_mem 0.8.0): Rewrite of param handling. interPairEnd param moved to "paired" section. Add param for '-a' option. Remove basic parallelism tag, which does not work with multiple inputs (thanks Björn Grüning for the notice). Simplify Python code. +- Release 0 (bwa_mem 0.7.7): Initial release in the Tool Shed. This is a fork of http://toolshed.g2.bx.psu.edu/view/yufei-luo/bwa_0_7_5 repository with the following changes: Remove .loc file, only .loc.sample should be included. Fix bwa_index.loc.sample file to contain only comments. Add suppressHeader param as in bwa_wrappers. Use $GALAXY_SLOTS environment variable when available. Add <version_command> and <help>. Remove unused import. Fix spacing and typos. Use new recommended citation. Add tool_dependencies.xml . Rename to bwa_mem. Remove definitively colorspace support. Use optparse instead of argparse since Galaxy still supports Python 2.6 . Add COPYING and readme.rst files. Development ----------- -Development is hosted at https://bitbucket.org/nsoranzo/bwa_mem . Contributions and bug reports are very welcome! +Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!