diff tool_dependencies.xml @ 0:60609a9cef3b draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 09 05:44:31 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="edena" version="3.130110">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">http://www.genomic.ch/edena/EdenaV3.130110.tar.gz</action>
+        <action type="shell_command">make</action>
+        <action type="move_directory_files">
+          <source_directory>bin</source_directory>
+          <destination_directory>$INSTALL_DIR/bin</destination_directory>
+        </action>
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+        <action type="set_environment">
+          <environment_variable name="EDENA_SITE_OPTIONS" action="set_to">"--nThreads 2"</environment_variable>
+        </action>
+      </actions>
+    </install>
+    <readme>
+Change the EDENA_SITE_OPTIONS variable in the installed env.sh file to adjust the number of threads to use (--nThreads).
+    </readme>
+  </package>
+</tool_dependency>