Mercurial > repos > crs4 > edge_pro
comparison get_edge_data.py @ 5:407b894abb08 draft
Uploaded
| author | crs4 |
|---|---|
| date | Thu, 03 Nov 2016 10:56:44 -0400 |
| parents | f77ce4f92b46 |
| children |
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| 4:d5464c9e1723 | 5:407b894abb08 |
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| 11 self.fnafile = fnafile | 11 self.fnafile = fnafile |
| 12 self.pttfile = pttfile | 12 self.pttfile = pttfile |
| 13 self.rntfile = rntfile | 13 self.rntfile = rntfile |
| 14 self.gfffile = gfffile | 14 self.gfffile = gfffile |
| 15 self.ftpurl = 'ftp.ncbi.nlm.nih.gov' | 15 self.ftpurl = 'ftp.ncbi.nlm.nih.gov' |
| 16 self.folder = '/genomes/Bacteria/' | 16 #self.folder = '/genomes/Bacteria/' |
| 17 self.folder = '/genomes/archive/old_refseq/Bacteria/' | |
| 17 strainName = self._getStrainName() | 18 strainName = self._getStrainName() |
| 18 print strainName | 19 print strainName |
| 19 if not strainName: | 20 if not strainName: |
| 20 sys.exit("Unrecognized RefSeq Genomic Accession ID") | 21 sys.exit("Unrecognized RefSeq Genomic Accession ID") |
| 21 ftp = FTP(self.ftpurl) | 22 ftp = FTP(self.ftpurl) |