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1 <tool id="hadoop_galaxy_make_pathset" name="Make Pathset" version="0.1.4">
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2 <description>Create a pathset for a set of files</description>
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3 <requirements>
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4 <requirement type="package" version="0.11">pydoop</requirement>
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5 <requirement type="package" version="0.1.4">hadoop-galaxy</requirement>
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6 </requirements>
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7
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8 <command>
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9 make_pathset
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10 #if str($paths.source) == 'tool_input'
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11 --force-local --data-format $paths.datapaths.ext "$output_path" "$paths.datapaths"
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12 #elif str($paths.source) == 'text_box'
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13 #if str($paths.filesystem_select) == "local_fs"
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14 --force-local
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15 #end if
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16 #if $paths.data_format
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17 --data-format "$paths.data_format"
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18 #end if
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19 "$output_path" "$paths.datapaths"
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20 #else
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21 #raise ValueError("BUG!! unknown paths.source value")
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22 #end if
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23 </command>
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24
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25 <inputs>
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26 <conditional name="paths">
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27 <param name="source" type="select" label="Path source">
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28 <option value="tool_input">Dataset from your history</option>
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29 <option value="text_box">User input</option>
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30 </param>
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31 <when value="tool_input">
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32 <param name="datapaths" type="data" label="A dataset in any format" />
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33 </when>
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34 <when value="text_box">
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35 <param name="filesystem_select" type="select" label="File system type">
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36 <option value="default_fs">Default</option>
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37 <option value="local_fs">Local FS</option>
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38 </param>
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39 <param name="datapaths" type="text" label="Paths or URIs" size="60">
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40 <validator type="empty_field" />
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41 </param>
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42 <param name="data_format" type="text" label="Extension representing data format" size="20" />
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43 </when>
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44 </conditional>
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45 </inputs>
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46
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47 <outputs>
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48 <data name="output_path" format="pathset" />
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49 </outputs>
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50
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51 <stdio>
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52 <exit_code range="1:" level="fatal" />
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53 </stdio>
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54
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55 <help>
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56 Create a pathset for a set of files to be used as input for Hadoop tools.
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57 </help>
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58 </tool>
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