comparison split_pathset.xml @ 1:30bd2584b6a0 draft default tip

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author crs4
date Wed, 15 Oct 2014 09:39:16 -0400
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0:7698311d4466 1:30bd2584b6a0
1 <tool id="hadoop_galaxy_split_pathset" name="Split pathset" version="0.1.0">
2 <description>Split a pathset according to a regular expression criteria</description>
3 <requirements>
4 <requirement type="package" version="0.11">pydoop</requirement>
5 <requirement type="package" version="0.1.1">hadoop-galaxy</requirement>
6 </requirements>
7
8 <command>
9 split_pathset '$criteria_expr'
10 #if $anchor_end
11 --anchor-end
12 #end if
13 --expand-levels $expand_levels
14 $input_pathset $output_true $output_false
15 </command>
16
17 <inputs>
18 <param name="criteria_expr" type="text" label="Regular expression criteria">
19 <validator type="empty_field" />
20 </param>
21 <param name="anchor_end" type="boolean"
22 checked="false"
23 label="Anchor expression and the end of the string (like $)"
24 />
25 <param name="expand_levels" type="integer"
26 value="0"
27 label="Expand paths by at least this many levels before applying criteria"
28 />
29 <param name="input_pathset" type="data" format="pathset" label="Input pathset" />
30 <param name="match_name" type="text" value="match" label="Name of dataset matching criteria">
31 <validator type="empty_field" />
32 </param>
33 <param name="no_match_name" type="text" value="no_match" label="Name of dataset not matching criteria">
34 <validator type="empty_field" />
35 </param>
36 </inputs>
37
38 <outputs>
39 <data name="output_true" type="data" format="pathset" label="$match_name" />
40 <data name="output_false" type="data" format="pathset" label="$no_match_name" />
41 </outputs>
42
43 <stdio>
44 <exit_code range="1:" level="fatal" />
45 </stdio>
46
47 <help>
48 Splits a pathset according to a regular expression.
49
50 You can have the tool expand the paths in the pathset by a certain number
51 of levels prior to testing whether it matches the regular expression.
52
53
54 **Note**: you can't use '$' in your regular expression. To anchor the
55 expression to the end of the path use the checkbox.
56
57
58 *Note*: the regular expression must match the path from its beginning.
59 </help>
60 </tool>