diff hadoop_galaxy-13348e73/make_pathset.xml @ 1:30bd2584b6a0 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hadoop_galaxy-13348e73/make_pathset.xml	Wed Oct 15 09:39:16 2014 -0400
@@ -0,0 +1,58 @@
+<tool id="hadoop_galaxy_make_pathset" name="Make Pathset" version="0.1.4">
+  <description>Create a pathset for a set of files</description>
+  <requirements>
+    <requirement type="package" version="0.11">pydoop</requirement>
+    <requirement type="package" version="0.1.4">hadoop-galaxy</requirement>
+  </requirements>
+
+  <command>
+    make_pathset
+    #if str($paths.source) == 'tool_input'
+      --force-local --data-format $paths.datapaths.ext "$output_path" "$paths.datapaths"
+    #elif str($paths.source) == 'text_box'
+      #if str($paths.filesystem_select) == "local_fs"
+        --force-local
+      #end if
+      #if $paths.data_format
+        --data-format "$paths.data_format"
+      #end if
+      "$output_path" "$paths.datapaths"
+    #else
+      #raise ValueError("BUG!! unknown paths.source value")
+    #end if
+  </command>
+
+  <inputs>
+    <conditional name="paths">
+      <param name="source" type="select" label="Path source">
+        <option value="tool_input">Dataset from your history</option>
+        <option value="text_box">User input</option>
+      </param>
+      <when value="tool_input">
+        <param name="datapaths" type="data" label="A dataset in any format" />
+      </when>
+      <when value="text_box">
+        <param name="filesystem_select" type="select" label="File system type">
+          <option value="default_fs">Default</option>
+          <option value="local_fs">Local FS</option>
+        </param>
+        <param name="datapaths" type="text" label="Paths or URIs" size="60">
+          <validator type="empty_field" />
+        </param>
+        <param name="data_format" type="text" label="Extension representing data format" size="20" />
+      </when>
+    </conditional>
+  </inputs>
+
+  <outputs>
+    <data name="output_path" format="pathset" />
+  </outputs>
+
+  <stdio>
+    <exit_code range="1:" level="fatal" />
+  </stdio>
+
+  <help>
+Create a pathset for a set of files to be used as input for Hadoop tools.
+  </help>
+</tool>