diff put_dataset.xml @ 1:30bd2584b6a0 draft default tip

Uploaded

--- a/put_dataset.xml	Fri May 30 06:48:47 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<tool id="hadoop_galaxy_put_dataset" name="Put dataset" version="0.1.0">
-  <description>Copy data from Galaxy storage to Hadoop storage.</description>
-  <requirements>
-    <requirement type="package" version="0.11">pydoop</requirement>
-    <requirement type="package" version="0.1.1">hadoop-galaxy</requirement>
-  </requirements>
-
-  <command>
-    put_dataset
-    #if $workspace != ""
-      --hadoop-workspace "$workspace"
-    #end if
-    #if $use_distcp
-      --distcp
-    #end if
-    "$input_pathset" "$output_path"
-  </command>
-
-  <inputs>
-    <param name="input_pathset" type="data" format="pathset" label="Galaxy pathset" />
-
-    <param name="workspace" type="text" label="Path to workspace for Hadoop data"
-       help="The data will be copied to a new directory under this path. The value can also be set through the HADOOP_GALAXY_PUT_DIR environment variable." />
-
-    <param name="use_distcp" type="boolean" checked="false" label="Use Hadoop distcp2"
-       help="Use distcp2 if Hadoop can access Galaxy's storage space and you're copying a large dataset." />
-  </inputs>
-
-  <outputs>
-    <data name="output_path" format="pathset" label="Hadoop pathset from $input_pathset.name" />
-  </outputs>
-
-  <stdio>
-    <exit_code range="1:" level="fatal" />
-  </stdio>
-
-  <help>
-      This tools copies data from Galaxy's storage to storage that is suitable for
-      Hadoop jobs.  An example of a use case may be to copy data from the Galaxy server
-      to HDFS. Whether this tool is required depends on your specific local setup.
-  </help>
-
-</tool>