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Update Orione citation. Upgrade Mosaik dependency to v. 2.2.28 (2.2.30 is buggy, see https://github.com/wanpinglee/MOSAIK/issues/11 ). Use 2.1.78 neural networks. Add package_zlib_1_2_8 and package_samtools_0_1_19 dependencies. Add <citations>.
author crs4
date Thu, 06 Nov 2014 13:20:15 -0500
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1 MOSAIK v.2 wrapper
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2 ==================
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4 Configuration
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5 -------------
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7 mosaik2 tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ).
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9 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool.
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11 If instead you are using an older Galaxy release, you should also add a line
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13 GALAXY_SLOTS=N; export GALAXY_SLOTS
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15 (where N is the number of CPU cores allocated by the job runner for this tool) to the file
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17 <tool_dependencies_dir>/mosaik/2.2.26/crs4/mosaik2/<hash_string>/env.sh
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19 Version history
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20 ---------------
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1fea05cdc1a1 Update Orione citation. Upgrade Mosaik dependency to v. 2.2.28 (2.2.30 is buggy, see https://github.com/wanpinglee/MOSAIK/issues/11 ). Use 2.1.78 neural networks. Add package_zlib_1_2_8 and package_samtools_0_1_19 dependencies. Add <citations>.
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22 - Release 1: Update Orione citation. Upgrade Mosaik dependency to v. 2.2.28 (2.2.30 is buggy, see https://github.com/wanpinglee/MOSAIK/issues/11 ). Use 2.1.78 neural networks. Add package_zlib_1_2_8 and package_samtools_0_1_19 dependencies. Add <citations>.
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23 - Release 0: Initial release in the Tool Shed.
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25 Development
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26 -----------
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28 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!