comparison tool-data/mosaik_index.loc.sample @ 0:6adb6e16b00f draft

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author crs4
date Wed, 02 Apr 2014 12:32:52 -0400
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-1:000000000000 0:6adb6e16b00f
1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of Mosaik indexed sequences data files. You will need
3 #to create these data files and then create a mosaik_index.loc file
4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The mosaik_index.loc
6 #file has this format (longer white space is the TAB character):
7 #
8 #<unique_build_id> <dbkey> <display_name> <fasta_file_path>
9 #
10 #So, for example, if you had hg18 indexed and stored in
11 #/depot/data2/galaxy/mosaik/hg18/
12 #then the mosaik_index.loc entry would look like this:
13 #
14 #hg18 hg18 hg18 Pretty /depot/data2/galaxy/mosaik/hg18/hg18.fa
15 #
16 #and your /depot/data2/galaxy/mosaik/hg18/ directory
17 #would contain the following files:
18 #TODO handle mosaik jump tables.
19 #