Mercurial > repos > crs4 > mugsy
view tool_dependencies.xml @ 2:13f806b78483 draft default tip
Add Boost requirement.
author | crs4 |
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date | Fri, 25 Oct 2013 06:39:33 -0400 |
parents | 1e8862eb2eba |
children |
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<?xml version="1.0"?> <tool_dependency> <package name="boost" version="1.53.0"> <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="mugsy" version="1.2.3.1"> <install version="1.0"> <actions> <!-- checkout from svn source repository into a directory with the same name of the package, which will be automatically used as working directory --> <action type="shell_command">svn checkout http://svn.code.sf.net/p/mugsy/code/ mugsy</action> <!-- fix for Boost >= 1.42.0 --> <action type="shell_command">sed -i 's/boost\/property_map\.hpp/boost\/property_map\/property_map.hpp/' trunk/chaining/synchain-mugsy.cpp</action> <!-- fix for Boost >= 1.47.0 --> <action type="shell_command">sed -i 's/boost\/graph\/kolmogorov_max_flow\.hpp/boost\/graph\/boykov_kolmogorov_max_flow.hpp/' trunk/chaining/synchain-mugsy.cpp trunk/mugsy-seqan/projects/library/apps/mugsy/mugsy.cpp</action> <!-- fix chaining Makefile --> <action type="shell_command">sed -i -e 's/-static//g' -e 's/-lbgl-viz -lboost_graph-gcc41-mt//g' trunk/chaining/Makefile</action> <!-- fix missing include in show-diff.cc --> <action type="shell_command">sed -i '13 a \#include <algorithm>' trunk/MUMmer3.20/src/tigr/show-diff.cc</action> <!-- skip make of streeproto.h since it would fail because of missing skproto.x --> <action type="shell_command">touch trunk/MUMmer3.20/src/kurtz/streesrc/streeproto.h</action> <!-- fix Makefile --> <action type="shell_command">sed -i -e 's/install synchain-mugsy/install chaining\/synchain-mugsy/' -e 's/install mugsyWGA \(.*\)/install mugsy-seqan\/projects\/library\/apps\/mugsy\/gcc\/mugsy \1\/mugsyWGA/' trunk/Makefile</action> <!-- fix MUMmer3.20 Makefile --> <action type="shell_command">sed -i '/DOC_DIR/d' trunk/MUMmer3.20/Makefile</action> <!-- populate the environment variables from the dependent repos --> <action type="set_environment_for_install"> <repository name="package_boost_1_53" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="boost" version="1.53.0" /> </repository> </action> <!-- use $BOOST_ROOT_DIR in chaining Makefile --> <action type="shell_command">sed -i -e 's/-I \/usr\/local\/projects\/angiuoli\/boost\/include\/boost-1_38/-I $(BOOST_ROOT_DIR)\/include/g' -e 's/-L \/usr\/local\/projects\/angiuoli\/boost\/lib\//-L $(BOOST_ROOT_DIR)\/lib/g' trunk/chaining/Makefile trunk/mugsy-seqan/platforms/gcc/platform.mak</action> <!-- equivalent of make clean --> <action type="shell_command">rm -f trunk/chaining/synchain-mugsy trunk/mugsyWGA trunk/synchain-mugsy && make -C trunk/MUMmer3.20 clean</action> <action type="shell_command">make -C trunk all</action> <action type="shell_command">make -C trunk install</action> <action type="move_directory_files"> <source_directory>trunk/mugsy_x86-64-v1r2.3.1</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> </action> <action type="set_environment"> <environment_variable action="set_to" name="MUGSY_INSTALL">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> </readme> </package> </tool_dependency>