Mercurial > repos > crs4 > prokka

diff tool_dependencies.xml @ 1:4b6f16a79fe4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add txt output file. Use a definition list instead of a block quote in <help>. Correct 2 dependency minimum versions.
author crs4
date Thu, 26 Sep 2013 12:39:52 -0400
parents 95505a9fa26f
children 4bafaa074484
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 10 13:11:26 2013 -0400
+++ b/tool_dependencies.xml	Thu Sep 26 12:39:52 2013 -0400
@@ -31,10 +31,10 @@
     <readme>
 Dependencies of Prokka which needs to be installed separately:
 - Perl core modules: File::Copy, FindBin, Getopt::Long, List::Util, Scalar::Util, Time::Piece, Time::Seconds;
-- Perl modules: Bio::SeqIO from BioPerl ( http://search.cpan.org/dist/BioPerl/ ) &gt;= 1.6.1, XML::Simple ( http://search.cpan.org/dist/XML-Simple/ );
+- Perl modules: Bio::SeqIO from BioPerl ( http://search.cpan.org/dist/BioPerl/ ) &gt;= 1.6.900, XML::Simple ( http://search.cpan.org/dist/XML-Simple/ );
 - Prodigal ( http://prodigal.ornl.gov/ ) &gt;= 2.60 ;
 - tbl2asn ( http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ ) &gt;= 21.0 ;
-- GNU Parallel ( http://www.gnu.org/software/parallel/ ) &gt;= 20120322 ;
+- GNU Parallel ( http://www.gnu.org/software/parallel/ ) &gt;= 20130422 ;
 - Barrnap ( http://www.vicbioinformatics.com/software.barrnap.shtml ) &gt;= 0.1 .
 
 Change the PROKKA_SITE_OPTIONS variable in the installed env.sh file to adjust the number of CPUs to use (--cpus).