Mercurial > repos > crs4 > prokka
diff test-data/out.err @ 14:eaee459f3d69 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
| author | iuc |
|---|---|
| date | Wed, 28 Mar 2018 12:38:42 -0400 |
| parents | a17498c603ec |
| children | bf68eb663bc3 |
line wrap: on
line diff
--- a/test-data/out.err Tue Mar 21 10:13:06 2017 -0400 +++ b/test-data/out.err Wed Mar 28 12:38:42 2018 -0400 @@ -47,19 +47,19 @@ DiscRep_ALL:FEATURE_LOCATION_CONFLICT::5 features have inconsistent gene locations. DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist -outdir/prokka:CDS hypothetical protein contig2:40-498 PROKKA_00001 +outdir/prokka:CDS hypothetical protein contig2:40-498 HMJLFLJH_00001 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist -outdir/prokka:CDS hypothetical protein contig2:498-614 PROKKA_00002 +outdir/prokka:CDS hypothetical protein contig2:498-614 HMJLFLJH_00002 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist -outdir/prokka:CDS hypothetical protein contig4:21-884 PROKKA_00003 +outdir/prokka:CDS hypothetical protein contig4:21-884 HMJLFLJH_00003 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist -outdir/prokka:CDS hypothetical protein contig5:275-406 PROKKA_00004 +outdir/prokka:CDS hypothetical protein contig5:275-406 HMJLFLJH_00004 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist -outdir/prokka:CDS hypothetical protein contig6:6-767 PROKKA_00005 +outdir/prokka:CDS hypothetical protein contig6:6-767 HMJLFLJH_00005 DiscRep_ALL:NO_ANNOTATION::3 bioseqs have no features outdir/prokka:contig1 (length 350) @@ -69,13 +69,13 @@ DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. DiscRep_ALL:ONCALLER_COMMENT_PRESENT::7 comment descriptors were found (all same) -outdir/prokka:contig1:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig2:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig3:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig4:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig5:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig6:Annotated using prokka 1.12 from https://github.com/tseemann/prokka -outdir/prokka:contig7:Annotated using prokka 1.12 from https://github.com/tseemann/prokka +outdir/prokka:contig1:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig2:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig3:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig4:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig5:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig6:Annotated using prokka 1.13 from https://github.com/tseemann/prokka +outdir/prokka:contig7:Annotated using prokka 1.13 from https://github.com/tseemann/prokka DiscRep_ALL:SHORT_PROT_SEQUENCES::2 protein sequences are shorter than 50 aa. outdir/prokka:contig2_2 (length 38)