Mercurial > repos > crs4 > prokka
diff prokka.xml @ 7:f5e44aad6498 draft
Support Prokka 1.11. Upgrade dependencies to package_barrnap_0_7, package_blast_plus_2_2_31, package_hmmer_3_1b2, package_tbl2asn_24_3.
author | crs4 |
---|---|
date | Thu, 01 Oct 2015 14:14:06 -0400 |
parents | 3ad7ef0ba385 |
children | 392255fa7ab9 |
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--- a/prokka.xml Mon Oct 27 06:45:52 2014 -0400 +++ b/prokka.xml Thu Oct 01 14:14:06 2015 -0400 @@ -1,16 +1,16 @@ -<tool id="prokka" name="Prokka" version="1.4.0"> +<tool id="prokka" name="Prokka" version="1.11.0"> <description>prokaryotic genome annotation</description> <requirements> - <requirement type="package" version="2.2.28">blast+</requirement> - <requirement type="package" version="3.1b1">hmmer</requirement> + <requirement type="package" version="2.2.31">blast+</requirement> + <requirement type="package" version="3.1b2">hmmer</requirement> <requirement type="package" version="1.2.36">aragorn</requirement> <requirement type="package" version="2.60">prodigal</requirement> - <requirement type="package" version="23.7">tbl2asn</requirement> + <requirement type="package" version="24.3">tbl2asn</requirement> <requirement type="package" version="20131122">gnu_parallel</requirement> - <requirement type="package" version="0.5">barrnap</requirement> + <requirement type="package" version="0.7">barrnap</requirement> <requirement type="package" version="1.1">infernal</requirement> <requirement type="package" version="0.1.6">minced</requirement> - <requirement type="package" version="1.10">prokka</requirement> + <requirement type="package" version="1.11">prokka</requirement> </requirements> <version_command>prokka --version</version_command> <command> @@ -200,16 +200,6 @@ You can use this tool only if you agree to the license terms of: `Prokka`_. .. _Prokka: http://www.vicbioinformatics.com/software.prokka.shtml - -If you use this tool, please cite: - -- |Cuccuru2014|_ -- |Seemann2014|_. - -.. |Cuccuru2014| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2014) Orione, a web-based framework for NGS analysis in microbiology. *Bioinformatics* 30(13), 1928-1929 -.. _Cuccuru2014: http://bioinformatics.oxfordjournals.org/content/30/13/1928 -.. |Seemann2014| replace:: Seemann, T. (2014) Prokka: rapid prokaryotic genome annotation. *Bioinformatics* 30(14), 2068-2069 -.. _Seemann2014: http://bioinformatics.oxfordjournals.org/content/30/14/2068 </help> <citations> <citation type="doi">10.1093/bioinformatics/btu135</citation>