# HG changeset patch
# User crs4
# Date 1389304190 18000
# Node ID b9fea998270aa73d56b330de13f808d4df8d1a6f
# Parent  5c0030f52b83d83c5bf1c6b46cf17e5edbc201a3
Fix Prokka 1.8 dependency installation.

diff -r 5c0030f52b83 -r b9fea998270a COPYING
--- a/COPYING	Wed Jan 08 04:29:37 2014 -0500
+++ b/COPYING	Thu Jan 09 16:49:50 2014 -0500
@@ -1,4 +1,4 @@
-Copyright © 2013 CRS4 Srl. http://www.crs4.it/
+Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/
 Copyright © 2013 Lionel Guy
 Created by:
 Paolo Uva <paolo.uva@crs4.it>
diff -r 5c0030f52b83 -r b9fea998270a readme.rst
--- a/readme.rst	Wed Jan 08 04:29:37 2014 -0500
+++ b/readme.rst	Thu Jan 09 16:49:50 2014 -0500
@@ -35,6 +35,7 @@
 Version history
 ---------------
 
+- Release 5 (prokka 1.3.0): Fix Prokka 1.8 dependency installation.
 - Release 4 (prokka 1.3.0): Support Prokka 1.8. Depend on package_minced_0_1_4 and package_tbl2asn_22_4 (requires Galaxy release_2013.11.04 or later). Update citation.
 - Release 3 (prokka 1.2.0): Use $GALAXY_SLOTS instead of $PROKKA_SITE_OPTIONS. Upgrade Barrnap dependency to v. 0.3. Upgrade Infernal dependency to v. 1.1. Depend on package_gnu_parallel_20131122 (requires Galaxy release_2013.11.04 or later).
 - Release 2 (prokka 1.1.0): Merge the wrappers by CRS4 and Lionel Guy. Directly call prokka, remove prokka.py . Add 'locustag', 'increment', 'gffver', 'compliant', 'addgenes', 'genus', 'species', 'strain', 'plasmid', 'gcode', 'usegenus', 'metagenome', 'fast', 'evalue', 'norrna', 'notrna' params. Upgrade BLAST+ dependency to v. 2.2.28. Add dependencies on prodigal and barrnap. Add readme.rst .
diff -r 5c0030f52b83 -r b9fea998270a tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jan 08 04:29:37 2014 -0500
+++ b/tool_dependencies.xml	Thu Jan 09 16:49:50 2014 -0500
@@ -31,7 +31,7 @@
     <install version="1.0">
       <actions>
         <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.7.tar.gz</action>
-        <action target_filename="prokka" type="download_file">http://www.vicbioinformatics.com/prokka-1.8</action>
+        <action target_filename="bin/prokka" type="download_file">http://www.vicbioinformatics.com/prokka-1.8</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>
           <destination_directory>$INSTALL_DIR</destination_directory>