Mercurial > repos > crs4 > prokka
changeset 15:3a0bd09a41dd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit f64c36610e6ca2240e4d745a5708d0d02ba4a16d"
| author | iuc |
|---|---|
| date | Mon, 02 Dec 2019 08:01:42 -0500 |
| parents | eaee459f3d69 |
| children | bf68eb663bc3 |
| files | prokka.xml |
| diffstat | 1 files changed, 14 insertions(+), 4 deletions(-) [+] |
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--- a/prokka.xml Wed Mar 28 12:38:42 2018 -0400 +++ b/prokka.xml Mon Dec 02 08:01:42 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="prokka" name="Prokka" version="1.13"> +<tool id="prokka" name="Prokka" version="1.13+galaxy1"> <description>Prokaryotic genome annotation</description> <requirements> <requirement type="package" version="1.13">prokka</requirement> @@ -183,15 +183,25 @@ <param name="input" ftype="fasta" value="phiX174.fasta" /> <param name="outputs" value="gff,gbk,fna,faa,ffn,sqn,fsa,tbl,tsv,err,txt" /> <output name="out_gff" file="out.gff" /> - <output name="out_gbk" file="out.gbk" lines_diff="14" /> + <output name="out_gbk" > + <assert_contents> + <has_text_matching expression="LOCUS" /> + <has_text_matching expression="//" /> + </assert_contents> + </output> <output name="out_fna" file="out.fna" /> <output name="out_faa" file="out.faa" /> <output name="out_ffn" file="out.ffn" /> - <output name="out_sqn" file="out.sqn" lines_diff="84" /> + <output name="out_sqn" > + <assert_contents> + <has_text_matching expression="Seq-entry" /> + <has_text_matching expression="contig2" /> + </assert_contents> + </output> <output name="out_fsa" file="out.fsa" /> <output name="out_tbl" file="out.tbl" /> <output name="out_tsv" file="out.tsv" /> - <output name="out_err" file="out.err" /> + <output name="out_err" file="out.err" lines_diff="14" /> <output name="out_txt" file="out.txt" /> <output name="out_log"> <assert_contents>