Mercurial > repos > crs4 > prokka
changeset 10:6aa88a432ffc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
| author | iuc |
|---|---|
| date | Sat, 29 Oct 2016 09:15:32 -0400 |
| parents | d004ca37843e |
| children | fd4b2f03cfc6 |
| files | readme.rst |
| diffstat | 1 files changed, 11 insertions(+), 1 deletions(-) [+] |
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--- a/readme.rst Fri Oct 28 13:45:14 2016 -0400 +++ b/readme.rst Sat Oct 29 09:15:32 2016 -0400 @@ -6,10 +6,20 @@ Prokka includes custom databases and is thus about a 340 MB download! +Dependencies of Prokka which need to be installed separately +------------------------------------------------------------- + +- Perl core modules: File\::Copy, FindBin, Getopt::Long, List::Util, Scalar::Util, Time::Piece, Time::Seconds; +- Perl modules: Bio::SeqIO from BioPerl_ >= 1.6.900, `XML::Simple`_; +- SignalP_ >= 3.0 is an optional dependency to find signal peptides. For licensing reasons, it is not used in the tool wrapper. + +.. _BioPerl: http://search.cpan.org/dist/BioPerl/ +.. _XML::Simple: http://search.cpan.org/dist/XML-Simple/ +.. _SignalP: http://www.cbs.dtu.dk/services/SignalP/ + Version history --------------- -- Release 8 (prokka 1.11.1): Use Conda for installing tool dependencies, ToolShed dependencies are not supported anymore. Add a test. The tool is now maintained by the IUC. - Release 7 (prokka 1.11.0): Support Prokka 1.11. Upgrade dependencies to package_barrnap_0_7, package_blast_plus_2_2_31, package_hmmer_3_1b2, package_tbl2asn_24_3. - Release 6 (prokka 1.4.0): Use <stdio> because prokka writes some warnings on stderr. Update Orione citation. Update Prokka citation. Support Prokka 1.10. Upgrade dependencies to package_minced_0_1_6, package_barrnap_0_5 and package_tbl2asn_23_7. Added --proteins option. Add <citations>. - Release 5 (prokka 1.3.0): Fix Prokka 1.8 dependency installation.