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author crs4
date Wed, 15 Oct 2014 09:41:10 -0400
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2 Galaxy wrapper for the Seal toolkit
3 ====================================
4
5 These are the Galaxy wrappers for the Seal toolkit for Hadoop-based processing
6 of sequencing data (http://biodoop-seal.sf.net).
7
8
9 Installation
10 -------------------
11
12 You can install the Seal-Galaxy wrappers through the Galaxy toolshed or like
13 any other Galaxy tool. The installation process will try to fetch and build
14 Seal and some of its dependencies. However, you'll need to make sure that
15 the build process can find any required headers, libraries and executables,
16 such as:
17
18 * javac
19 * protobuf
20 * maven
21 * ant
22 * zlib
23 * git
24 * hadoop
25
26 For details on Seal's installation process refer directly to [its
27 documentation](http://biodoop-seal.sourceforge.net/installation.html).
28
29 Hadoop-Galaxy integration
30 ----------------------------
31
32 These wrappers use the [Hadoop-Galaxy](https://github.com/crs4/hadoop-galaxy)
33 tool to implement the integration between Hadoop and Galaxy. You should have a
34 look at its documentation.
35
36 An important issue
37 -----------------------
38
39 An implication of the integration provided by Hadoop-Galaxy is that Galaxy
40 knows nothing about your actual data. Because of this, removing the Galaxy
41 datasets does not delete the files produced by your Hadoop runs, potentially
42 resulting in the waste of a lot of space. Also, be careful with situations
43 where you may end up with multiple pathsets pointing to the same data, or where
44 they point to data that you want to access from Hadoop but would not want to
45 delete (e.g., your run directories).
46
47 Have a look at the Hadoop-Galaxy README for more details.
48
49
50 Authors
51 -------------
52
53 Luca Pireddu <pireddu@crs4.it>
54
55
56 Support
57 -------------
58
59 No support is provided.
60
61
62
63 License
64 --------------
65
66 This code is release under the GPLv3.
67
68
69
70 Copyright
71 --------------
72
73 Copyright CRS4, 2011-2014.