Mercurial > repos > crs4 > seal_galaxy
diff seal-galaxy-cc1b1911/README.md @ 0:244073d9abc1 draft default tip
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| author | crs4 |
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| date | Wed, 15 Oct 2014 09:41:10 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/seal-galaxy-cc1b1911/README.md Wed Oct 15 09:41:10 2014 -0400 @@ -0,0 +1,73 @@ + +Galaxy wrapper for the Seal toolkit +==================================== + +These are the Galaxy wrappers for the Seal toolkit for Hadoop-based processing +of sequencing data (http://biodoop-seal.sf.net). + + +Installation +------------------- + +You can install the Seal-Galaxy wrappers through the Galaxy toolshed or like +any other Galaxy tool. The installation process will try to fetch and build +Seal and some of its dependencies. However, you'll need to make sure that +the build process can find any required headers, libraries and executables, +such as: + +* javac +* protobuf +* maven +* ant +* zlib +* git +* hadoop + +For details on Seal's installation process refer directly to [its +documentation](http://biodoop-seal.sourceforge.net/installation.html). + +Hadoop-Galaxy integration +---------------------------- + +These wrappers use the [Hadoop-Galaxy](https://github.com/crs4/hadoop-galaxy) +tool to implement the integration between Hadoop and Galaxy. You should have a +look at its documentation. + +An important issue +----------------------- + +An implication of the integration provided by Hadoop-Galaxy is that Galaxy +knows nothing about your actual data. Because of this, removing the Galaxy +datasets does not delete the files produced by your Hadoop runs, potentially +resulting in the waste of a lot of space. Also, be careful with situations +where you may end up with multiple pathsets pointing to the same data, or where +they point to data that you want to access from Hadoop but would not want to +delete (e.g., your run directories). + +Have a look at the Hadoop-Galaxy README for more details. + + +Authors +------------- + +Luca Pireddu <pireddu@crs4.it> + + +Support +------------- + +No support is provided. + + + +License +-------------- + +This code is release under the GPLv3. + + + +Copyright +-------------- + +Copyright CRS4, 2011-2014.