Mercurial > repos > crs4 > sequel
comparison readme.rst @ 1:ccadfae70b02 draft
Use $GALAXY_SLOTS instead of $SEQUEL_SITE_OPTIONS. Depend on package_blat_35x1 . Add readme.rst . Update Orione citation.
| author | crs4 |
|---|---|
| date | Wed, 05 Mar 2014 06:48:08 -0500 |
| parents | |
| children | 208ce57f9221 |
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| 0:58e1eb37fddc | 1:ccadfae70b02 |
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| 1 SEQuel wrapper | |
| 2 ============== | |
| 3 | |
| 4 Configuration | |
| 5 ------------- | |
| 6 | |
| 7 sequel_wrapper tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ). | |
| 8 | |
| 9 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool. | |
| 10 | |
| 11 If instead you are using an older Galaxy release, you should also add a line | |
| 12 | |
| 13 GALAXY_SLOTS=N; export GALAXY_SLOTS | |
| 14 | |
| 15 (where N is the number of CPU cores allocated by the job runner for this tool) to the file | |
| 16 | |
| 17 <tool_dependencies_dir>/sequel/1.0.2/crs4/sequel/<hash_string>/env.sh | |
| 18 | |
| 19 Version history | |
| 20 --------------- | |
| 21 | |
| 22 - Release 1: Use $GALAXY_SLOTS instead of $SEQUEL_SITE_OPTIONS. Depend on package_blat_35x1 . Add readme.rst . Update Orione citation. | |
| 23 - Release 0: Initial release in the Tool Shed. | |
| 24 | |
| 25 Development | |
| 26 ----------- | |
| 27 | |
| 28 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome! |