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Use GALAXY_SLOTS for multithreading in Bowtie. Create symlinks instead of copying files. Specify in help that Bowtie is used to align the reads to the contigs. Add readme.rst .
author crs4
date Mon, 03 Mar 2014 11:28:41 -0500
parents 988d5a82291a
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1:d180348fe9db 2:87ffe493b6c1
1 Copyright © 2013 CRS4 Srl. http://www.crs4.it/ 1 Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/
2 Created by: 2 Created by:
3 Gianmauro Cuccuru <gianmauro.cuccuru@crs4.it> 3 Gianmauro Cuccuru <gianmauro.cuccuru@crs4.it>
4 Nicola Soranzo <nicola.soranzo@crs4.it> 4 Nicola Soranzo <nicola.soranzo@crs4.it>
5 5
6 Permission is hereby granted, free of charge, to any person obtaining a 6 Permission is hereby granted, free of charge, to any person obtaining a