Mercurial > repos > crs4 > sopra
comparison tool_dependencies.xml @ 1:d180348fe9db draft
Use new package_bowtie_1_0_0 .
| author | crs4 |
|---|---|
| date | Tue, 29 Oct 2013 05:27:29 -0400 |
| parents | 988d5a82291a |
| children |
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| 0:988d5a82291a | 1:d180348fe9db |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <!--<package name="bowtie" version="1.0.0"> | 3 <package name="bowtie" version="1.0.0"> |
| 4 <repository name="package_bowtie_1_0_0" owner="iuc" /> | 4 <repository changeset_revision="9fcaaedbbfd6" name="package_bowtie_1_0_0" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package>--> | 5 </package> |
| 6 <package name="sopra" version="1.4.6"> | 6 <package name="sopra" version="1.4.6"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">http://www.physics.rutgers.edu/~anirvans/SOPRA/SOPRA_v1.4.6.zip</action> | 9 <action type="download_by_url">http://www.physics.rutgers.edu/~anirvans/SOPRA/SOPRA_v1.4.6.zip</action> |
| 10 <action type="move_directory_files"> | 10 <action type="move_directory_files"> |
| 11 <source_directory>source_codes_v1.4.6/SOPRA_with_prebuilt_contigs</source_directory> | 11 <source_directory>source_codes_v1.4.6/SOPRA_with_prebuilt_contigs</source_directory> |
| 12 <destination_directory>$INSTALL_DIR/SOPRA_with_prebuilt_contigs</destination_directory> | 12 <destination_directory>$INSTALL_DIR/SOPRA_with_prebuilt_contigs</destination_directory> |
| 13 </action> | 13 </action> |
| 14 <action type="shell_command">chmod 755 $INSTALL_DIR/SOPRA_with_prebuilt_contigs/*.pl</action> | 14 <action type="shell_command">chmod 755 $INSTALL_DIR/SOPRA_with_prebuilt_contigs/*.pl</action> |
| 15 <action type="set_environment"> | 15 <action type="set_environment"> |
| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable> | 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable> |
| 17 </action> | 17 </action> |
| 18 </actions> | 18 </actions> |
| 19 </install> | 19 </install> |
| 20 </package> | 20 </package> |
| 21 </tool_dependency> | 21 </tool_dependency> |