Mercurial > repos > crs4 > ssake

view tool_dependencies.xml @ 0:0ec408bcfc80 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author crs4
date Wed, 11 Sep 2013 12:51:21 -0400
parents
children 386166019772
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
  <package name="ssake" version="3.8">
    <install version="1.0">
      <actions>
        <action type="download_by_url" target_filename="ssake_v3-8.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz</action>
        <!-- fix for Perl >= 5.16.0-->
        <action type="shell_command">sed -i -e 's/require "getopts.pl"/use Getopt::Std/' -e 's/&amp;Getopts/getopts/' SSAKE tools/TQSfastq.pl</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
        </action>
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/tools</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>