Mercurial > repos > crs4 > ssake
changeset 2:f20db7280f89 draft default tip
Fix SSAKE download URL (thanks to Graham Etherington for reporting this). Update Orione citation.
| author | crs4 |
|---|---|
| date | Thu, 06 Mar 2014 11:50:08 -0500 |
| parents | 386166019772 |
| children | |
| files | readme.rst ssake.xml tool_dependencies.xml |
| diffstat | 3 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/readme.rst Tue Jan 07 04:48:50 2014 -0500 +++ b/readme.rst Thu Mar 06 11:50:08 2014 -0500 @@ -4,6 +4,7 @@ Version history --------------- +- Release 2: Fix SSAKE download URL (thanks to Graham Etherington for reporting this). Update Orione citation. - Release 1: Update to SSAKE 3.8.1. Add <version_command>. Make pylint happier. Simplify code. Add readme.rst . - Release 0: Initial release in the Tool Shed.
--- a/ssake.xml Tue Jan 07 04:48:50 2014 -0500 +++ b/ssake.xml Thu Mar 06 11:50:08 2014 -0500 @@ -88,7 +88,7 @@ If you use this tool in Galaxy, please cite |Cuccuru2013|_. -.. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted* +.. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2014) Orione, a web-based framework for NGS analysis in microbiology. *Bioinformatics*, accepted .. _Cuccuru2013: http://orione.crs4.it/ This tool uses `SSAKE`_, which is licensed separately. Please cite |Warren2007|_.
--- a/tool_dependencies.xml Tue Jan 07 04:48:50 2014 -0500 +++ b/tool_dependencies.xml Thu Mar 06 11:50:08 2014 -0500 @@ -3,7 +3,7 @@ <package name="ssake" version="3.8.1"> <install version="1.0"> <actions> - <action type="download_by_url" target_filename="ssake_v3-8-1.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.1/ssake_v3.8.1-tar.gz</action> + <action type="download_by_url" target_filename="ssake_v3-8-1.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.1/ssake_v3-8-1-tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory>