diff taxonomy_krona_chart.xml @ 8:c9f8fef1df74 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart commit 67d6ebc478c0cb5b7923de3f60f889a9b56f0856

--- a/taxonomy_krona_chart.xml	Mon Feb 19 06:29:08 2018 -0500
+++ b/taxonomy_krona_chart.xml	Fri Apr 13 15:32:04 2018 -0400
@@ -1,10 +1,12 @@
-<tool id="taxonomy_krona_chart" name="Krona pie chart" version="2.6.1">
+<tool id="taxonomy_krona_chart" name="Krona pie chart" version="2.6.1.1">
   <description>from taxonomic profile</description>
   <requirements>
     <requirement type="package" version="2.6.1">krona</requirement>
   </requirements>
   <version_command>ktImportText | sed -n 's/.*\(KronaTools [[:digit:].]\{1,\}\).*/\1/p'</version_command>
   <command detect_errors="exit_code"><![CDATA[
+    #import re
+
     #if $type_of_data.input[0].is_of_type('taxonomy'):
         ktImportGalaxy
         -d '${type_of_data.max_rank}'
@@ -19,8 +21,9 @@
         -n '${root_name}'
         -o '${output}'
         ${combine_inputs}
-        #for $input_count, $input_dataset in enumerate( $type_of_data.input ):
-            '${input_dataset},${input_count}'
+        #for $input_dataset in $type_of_data.input:
+             #set $identifier=re.sub('[^\w\-\s]', '_', str($input_dataset.element_identifier))
+            '${input_dataset},${identifier}'
         #end for
     #end if
     &&
@@ -78,6 +81,21 @@
       <param name="combine_inputs" value="False"/>
       <output name="output" file="krona_test1.html" ftype="html" lines_diff="102"/>
     </test>
+    <test><!-- test with tabular inputs and multiple datasets -->
+      <param name="type_of_data_selector" value="text"/>
+      <param name="input" value="pampa-small.tsv,anguil-small.tsv" ftype="tabular" />
+      <param name="max_rank" value="Genus"/>
+      <param name="root_name" value="Root"/>
+      <param name="combine_inputs" value="False"/>
+      <output name="output" ftype="html">
+        <assert_contents>
+          <has_text text="KRONA"/>
+          <has_text text="pampa-small"/>
+          <has_text text="anguil-small"/>
+          <has_text text="Proteobacteria"/>
+          </assert_contents>
+      </output>
+    </test>
   </tests>
   <help>
 **What it does**