# HG changeset patch
# User iuc
# Date 1519039748 18000
# Node ID 73486cc6170eeddeaa7a0f3d67beb2c7107236e9
# Parent  d41b98e72c4c75dc8d29e6664b60d152ef175e2d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart commit 40d8aaf782f1693a435ec17abe81e81fa157f724

diff -r d41b98e72c4c -r 73486cc6170e taxonomy_krona_chart.xml
--- a/taxonomy_krona_chart.xml	Sat Aug 19 09:45:58 2017 -0400
+++ b/taxonomy_krona_chart.xml	Mon Feb 19 06:29:08 2018 -0500
@@ -28,9 +28,9 @@
   ]]></command>
   <inputs>
     <conditional name="type_of_data">
-      <param name="type_of_data_selector" type="select" label="What is the type of your input data" help="Select between Galaxy Taxonomy and MetaPhlAn Text">
+      <param name="type_of_data_selector" type="select" label="What is the type of your input data" help="Choose between Galaxy Taxonomy and generic table format (e.g. from MetaPhlAn or mothur)">
         <option value="taxonomy" selected="True">Taxonomy</option>
-        <option value="text">MetaPhlAn</option>
+        <option value="text">Tabular</option>
       </param>
       <when value="taxonomy">
         <param name="input" type="data" format="taxonomy" multiple="True" label="Input file" help="Select a taxonomy dataset" />
@@ -97,6 +97,26 @@
 
 -----
 
+**Input format**
+
+*Tabular* input format should be a tab-delimited file with the first column containing a count
+and the remaining columns describing the hierarchy. For example::
+
+    2 Fats Saturated fat
+    3 Fats Unsaturated fat Monounsaturated fat
+    3 Fats Unsaturated fat Polyunsaturated fat
+    13 Carbohydrates Sugars
+    4 Carbohydrates Dietary fiber
+    21 Carbohydrates
+    5 Protein
+    4
+
+which would yield this `Krona plot`_.
+
+.. _Krona plot: https://marbl.github.io/Krona/examples/xml.krona.html
+
+-----
+
 **License and citation**
 
 This Galaxy tool is Copyright © 2013-2014 `CRS4 Srl.`_ and is released under the `MIT license`_.