# HG changeset patch # User iuc # Date 1523647924 14400 # Node ID c9f8fef1df74fad3adf47037dd9ec9ec0b97f42a # Parent 73486cc6170eeddeaa7a0f3d67beb2c7107236e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart commit 67d6ebc478c0cb5b7923de3f60f889a9b56f0856 diff -r 73486cc6170e -r c9f8fef1df74 taxonomy_krona_chart.xml --- a/taxonomy_krona_chart.xml Mon Feb 19 06:29:08 2018 -0500 +++ b/taxonomy_krona_chart.xml Fri Apr 13 15:32:04 2018 -0400 @@ -1,10 +1,12 @@ - + from taxonomic profile krona ktImportText | sed -n 's/.*\(KronaTools [[:digit:].]\{1,\}\).*/\1/p' + + + + + + + + + + + + + + + **What it does** diff -r 73486cc6170e -r c9f8fef1df74 test-data/anguil-small.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/anguil-small.tsv Fri Apr 13 15:32:04 2018 -0400 @@ -0,0 +1,200 @@ +249 Bacteria(100) Verrucomicrobia(100) Spartobacteria(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) 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Gp4(100) Gp4_unclassified(100) Gp4_unclassified(100) +6 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) diff -r 73486cc6170e -r c9f8fef1df74 test-data/pampa-small.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pampa-small.tsv Fri Apr 13 15:32:04 2018 -0400 @@ -0,0 +1,200 @@ +680 Bacteria(100) Verrucomicrobia(100) Spartobacteria(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) +132 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhizobiales(100) Bradyrhizobiaceae(100) Bradyrhizobiaceae_unclassified(75) +72 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Gp4(100) Gp4_unclassified(100) Gp4_unclassified(100) +30 Bacteria(100) Verrucomicrobia(100) Spartobacteria(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) +67 Bacteria(100) 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Gp4_unclassified(100) Gp4_unclassified(100) +14 Bacteria(100) Verrucomicrobia(100) Subdivision3(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +12 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Gp1(100) Gp1_unclassified(100) Gp1_unclassified(100) +14 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Gp1(100) Gp1_unclassified(100) Gp1_unclassified(100) +2 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +13 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +3 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +8 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp16(100) Gp16(100) Gp16_unclassified(100) Gp16_unclassified(100) +6 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp7(100) Gp7(100) Gp7_unclassified(100) Gp7_unclassified(100) +2 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +1 Bacteria(100) Verrucomicrobia(100) Spartobacteria(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) +13 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Gp1(100) Gp1_unclassified(100) Gp1_unclassified(100) +11 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhodospirillales(100) Acetobacteraceae(100) Acetobacteraceae_unclassified(100) +1 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhizobiales(100) Methylobacteriaceae(100) Microvirga(100) +4 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +13 Bacteria(100) Proteobacteria(100) Gammaproteobacteria(100) Pseudomonadales(100) Pseudomonadaceae(100) Pseudomonas(77) +4 Bacteria(100) Gemmatimonadetes(100) Gemmatimonadetes(100) Gemmatimonadales(100) Gemmatimonadaceae(100) Gemmatimonas(100) +13 Bacteria(100) Verrucomicrobia(100) Subdivision3(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) +1 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +5 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +1 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +3 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +3 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Aridibacter_unclassified(100) Aridibacter_unclassified(100) +3 Bacteria(100) Verrucomicrobia(100) Subdivision3(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) +2 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) +9 Bacteria(100) Verrucomicrobia(100) Subdivision3(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) Subdivision3_unclassified(100) +5 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhodospirillales(100) Rhodospirillales_unclassified(100) Rhodospirillales_unclassified(100) +9 Bacteria(100) Proteobacteria(100) Proteobacteria_unclassified(100) Proteobacteria_unclassified(100) Proteobacteria_unclassified(100) Proteobacteria_unclassified(100) +8 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Gp1(100) Gp1_unclassified(100) Gp1_unclassified(100) +11 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Gp1(100) Gp1_unclassified(100) Gp1_unclassified(100) +3 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +1 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +1 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +2 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Aridibacter(100) Aridibacter_unclassified(100) Aridibacter_unclassified(100) +3 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Gp4(100) Gp4_unclassified(100) Gp4_unclassified(100) +11 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp11(100) Gp11(100) Gp11_unclassified(100) Gp11_unclassified(100) +11 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp3(100) Candidatus_Solibacter(100) Candidatus_Solibacter_unclassified(100) Candidatus_Solibacter_unclassified(100) +2 Bacteria(100) Verrucomicrobia(100) Spartobacteria(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) Spartobacteria_unclassified(100) +6 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +10 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp5(100) Gp5(100) Gp5_unclassified(100) Gp5_unclassified(100) +3 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) +5 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +10 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp1(100) Acidobacteria_Gp1_unclassified(100) Acidobacteria_Gp1_unclassified(100) Acidobacteria_Gp1_unclassified(100) +4 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +6 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +4 Bacteria(100) Proteobacteria(100) Betaproteobacteria(100) Betaproteobacteria_unclassified(100) Betaproteobacteria_unclassified(100) Betaproteobacteria_unclassified(100) +7 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +4 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhodospirillales(100) Rhodospirillaceae(100) Dongia(100) +6 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhizobiales(100) Rhizobiales_unclassified(100) Rhizobiales_unclassified(100) +6 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Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +5 Bacteria(100) Actinobacteria(100) Actinobacteria(100) Solirubrobacterales(100) Solirubrobacteraceae(100) Solirubrobacter(100) +8 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +8 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +1 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp6(100) Gp6(100) Gp6_unclassified(100) Gp6_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +7 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +5 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +1 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +4 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +7 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +2 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +5 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +2 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Gp4(100) Gp4_unclassified(100) Gp4_unclassified(100) +3 Bacteria(100) Acidobacteria(100) Acidobacteria_Gp4(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) Acidobacteria_Gp4_unclassified(100) +7 Bacteria(100) Verrucomicrobia(100) Verrucomicrobia_unclassified(100) Verrucomicrobia_unclassified(100) Verrucomicrobia_unclassified(100) Verrucomicrobia_unclassified(100) +8 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +9 Bacteria(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) Bacteria_unclassified(100) +4 Bacteria(100) Proteobacteria(100) Alphaproteobacteria(100) Rhizobiales(100) Hyphomicrobiaceae(100) Pedomicrobium(100)