Mercurial > repos > cstrittmatter > skesa
comparison skesa.xml @ 15:06d5e64a0586 draft
Uploaded
| author | estrain |
|---|---|
| date | Thu, 16 Aug 2018 14:27:49 -0400 |
| parents | 1581b4e8d993 |
| children | 43e83ec28faa |
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| 14:1581b4e8d993 | 15:06d5e64a0586 |
|---|---|
| 12 #else if $jobtype.select == "se" | 12 #else if $jobtype.select == "se" |
| 13 --fastq $fastq1 | 13 --fastq $fastq1 |
| 14 #else if $jobtype.select == "pe" | 14 #else if $jobtype.select == "pe" |
| 15 --fastq $fastq1,$fastq2 --use_paired_ends | 15 --fastq $fastq1,$fastq2 --use_paired_ends |
| 16 #else if $jobtype.select == "rp" | 16 #else if $jobtype.select == "rp" |
| 17 --fastq $pairedf.forward,$pairedf.reverse --use_paired_ends | 17 #--fastq $pairedf.forward,$pairedf.reverse --use_paired_ends |
| 18 --fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends | |
| 18 #end if | 19 #end if |
| 19 #if $cores != 0 | 20 #if $cores != 0 |
| 20 --cores $cores | 21 --cores $cores |
| 21 #end if | 22 #end if |
| 22 --memory $memory > results.skesa.fasta | 23 --memory $memory > results.skesa.fasta |