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comparison skesa.xml @ 12:1946411b25bc draft

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author estrain
date Thu, 16 Aug 2018 14:05:56 -0400
parents 1b69d1441486
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11:1b69d1441486 12:1946411b25bc
12 #else if $jobtype.select == "se" 12 #else if $jobtype.select == "se"
13 --fastq $fastq1 13 --fastq $fastq1
14 #else if $jobtype.select == "pe" 14 #else if $jobtype.select == "pe"
15 --fastq $fastq1,$fastq2 --use_paired_ends 15 --fastq $fastq1,$fastq2 --use_paired_ends
16 #else if $jobtype.select == "rp" 16 #else if $jobtype.select == "rp"
17 --fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends 17 --fastq $pairedf.forward,$pairedf.reverse --use_paired_ends
18 #end if 18 #end if
19 #if $cores != 0 19 #if $cores != 0
20 --cores $cores 20 --cores $cores
21 #end if 21 #end if
22 --memory $memory > results.skesa.fasta 22 --memory $memory > results.skesa.fasta