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comparison skesa.xml @ 16:43e83ec28faa draft

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Uploaded
author estrain
date Thu, 16 Aug 2018 14:28:43 -0400
parents 06d5e64a0586
children 53297c68021b
comparison
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15:06d5e64a0586 16:43e83ec28faa
12 #else if $jobtype.select == "se" 12 #else if $jobtype.select == "se"
13 --fastq $fastq1 13 --fastq $fastq1
14 #else if $jobtype.select == "pe" 14 #else if $jobtype.select == "pe"
15 --fastq $fastq1,$fastq2 --use_paired_ends 15 --fastq $fastq1,$fastq2 --use_paired_ends
16 #else if $jobtype.select == "rp" 16 #else if $jobtype.select == "rp"
17 #--fastq $pairedf.forward,$pairedf.reverse --use_paired_ends
18 --fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends 17 --fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends
19 #end if 18 #end if
20 #if $cores != 0 19 #if $cores != 0
21 --cores $cores 20 --cores $cores
22 #end if 21 #end if