Mercurial > repos > cstrittmatter > skesa

diff skesa.xml @ 15:06d5e64a0586 draft

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Uploaded
author estrain
date Thu, 16 Aug 2018 14:27:49 -0400
parents 1581b4e8d993
children 43e83ec28faa
line wrap: on
line diff
--- a/skesa.xml	Thu Aug 16 14:11:34 2018 -0400
+++ b/skesa.xml	Thu Aug 16 14:27:49 2018 -0400
@@ -14,7 +14,8 @@
       #else if $jobtype.select == "pe"
 	--fastq $fastq1,$fastq2 --use_paired_ends
       #else if $jobtype.select == "rp"
-	--fastq $pairedf.forward,$pairedf.reverse --use_paired_ends
+	#--fastq $pairedf.forward,$pairedf.reverse --use_paired_ends
+	--fastq $pairedf['forward'],$pairedf['reverse'] --use_paired_ends
       #end if
       #if $cores != 0
       --cores $cores